Methods and materials for optimization of electronic transportation and hybridization reactions
Methods for the transport and hybridization of a nucleic acid on an electrode device by providing a low conductivity buffer with a reducing agent to the device. The low conductivity buffer may also contain a zwitterion. A current and voltage is applied to a location of the device to effect electroph...
Saved in:
Main Authors | , , , , , |
---|---|
Format | Patent |
Language | English |
Published |
01.01.2008
|
Online Access | Get full text |
Cover
Loading…
Abstract | Methods for the transport and hybridization of a nucleic acid on an electrode device by providing a low conductivity buffer with a reducing agent to the device. The low conductivity buffer may also contain a zwitterion. A current and voltage is applied to a location of the device to effect electrophoretic transportation of the nucleic acid towards the location. The nucleic acid is then hybridized to a nucleic probed located at the location. The reducing agent in the low conductivity buffer may also be acting as a chaotropic agent. |
---|---|
AbstractList | Methods for the transport and hybridization of a nucleic acid on an electrode device by providing a low conductivity buffer with a reducing agent to the device. The low conductivity buffer may also contain a zwitterion. A current and voltage is applied to a location of the device to effect electrophoretic transportation of the nucleic acid towards the location. The nucleic acid is then hybridized to a nucleic probed located at the location. The reducing agent in the low conductivity buffer may also be acting as a chaotropic agent. |
Author | Patterson, Tricia Smolko, Daniel D Canter, David Hodko, Dalibor Haigis, Robert W Swanson, Paul D |
Author_xml | – sequence: 1 givenname: Daniel D surname: Smolko fullname: Smolko, Daniel D – sequence: 2 givenname: Paul D surname: Swanson fullname: Swanson, Paul D – sequence: 3 givenname: Dalibor surname: Hodko fullname: Hodko, Dalibor – sequence: 4 givenname: David surname: Canter fullname: Canter, David – sequence: 5 givenname: Robert W surname: Haigis fullname: Haigis, Robert W – sequence: 6 givenname: Tricia surname: Patterson fullname: Patterson, Tricia |
BookMark | eNqNjTsOwjAQRF1Awe8OewEkIIk4AALR0NFHxl4TS8mutV4KOD2OgJ5qRpo3M3MzISacmfaC2rHPYMnDYBUl2j5DYAFOGof4shqZgANgj06FKTpQsZQTi37Csds9bxL9Dxe0bjR5aaahDOLqqwsDp-P1cF4_cipvpLm9l7Eim321rZt6V_2BvAERUUDd |
ContentType | Patent |
CorporateAuthor | Nanogen, Inc |
CorporateAuthor_xml | – name: Nanogen, Inc |
DBID | EFH |
DatabaseName | USPTO Issued Patents |
DatabaseTitleList | |
Database_xml | – sequence: 1 dbid: EFH name: USPTO Issued Patents url: http://www.uspto.gov/patft/index.html sourceTypes: Open Access Repository |
DeliveryMethod | fulltext_linktorsrc |
ExternalDocumentID | 07314542 |
GroupedDBID | EFH |
ID | FETCH-uspatents_grants_073145423 |
IEDL.DBID | EFH |
IngestDate | Sun Mar 05 22:30:24 EST 2023 |
IsOpenAccess | true |
IsPeerReviewed | false |
IsScholarly | false |
Language | English |
LinkModel | DirectLink |
MergedId | FETCHMERGED-uspatents_grants_073145423 |
OpenAccessLink | https://image-ppubs.uspto.gov/dirsearch-public/print/downloadPdf/7314542 |
ParticipantIDs | uspatents_grants_07314542 |
PatentNumber | 7314542 |
PublicationCentury | 2000 |
PublicationDate | 20080101 |
PublicationDateYYYYMMDD | 2008-01-01 |
PublicationDate_xml | – month: 01 year: 2008 text: 20080101 day: 01 |
PublicationDecade | 2000 |
PublicationYear | 2008 |
References | Mandecki et al. (4936963) 19900600 Beltz, et al., "Isolation Of Multigene Families and Determination Of Homologies By Filter Hybridization Methods", Methods In Enzymology, vol. 100, 1983, 266-285. Begg et al. (5853668) 19981200 Southern (6054270) 20000400 Barinaga, "Will 'DNA Chip' Speed Genome Initiative?", Science, vol. 253, Sep. 27, 1991, 1489. Edman et al. (6780584) 20040800 Stanley (5527670) 19960600 Brown, et al., "Electrochemically Induced Adsorption Of Radio-Labeled DNA On Gold and HOPG Substrates For STM Investigations", Ultramicroscopy, vol. 38, 1991, 253-264. Zhu et al. (5110434) 19920500 Hu et al. (5151189) 19920900 Newman (4822566) 19890400 Cozzette et al. (5063081) 19911100 Sosnowski et al. (6051380) 20000400 Pirrung et al. (5143854) 19920900 Goldstein et al. (4584075) 19860400 Konrad (5789167) 19980800 MacConnell (4787963) 19881100 Lauks et al. (5096669) 19920300 Elings et al. (4537861) 19850800 Kakerow, et al., "A Monolithic Sensor Array Of Individually Addressable Microelectrodes", Sensors and Actuators A, 1994, 296-301. Tice, Jr. et al. (5064519) 19911100 Soane et al. (5750015) 19980500 Comfort et al. (4807161) 19890200 Wallace, et al., "Hybridization Of Synthetic Oligodeoxyribonucleotides to Φ x 174 DNA: The Effect of Single Base Pair Mismatch", Nucleic Acids Research, vol. 6, No. 11, 1979, 3543-3557. Wilding et al. (5304487) 19940400 Okano et al. (5434049) 19950700 Stabinsky (4751177) 19880600 Ranki, et al., "Sandwich Hybridization As A Convenient Method For the Dection of Nucleic Acids In Crude Samples", Gene, vol. 21, 1983, 77-85. "Le Principe d l′ Hybridization ", Biofutur. Le Mensuel Europeen de Biotechnology, Editions Scientifiques Elsevier, Paris, FR, vol. 1997, No. 166, Apr. 1997, XP004279767, p. 3. ISSN:0294-3508. JPO English language computer translation of Yoshihro (JP 09-145673 A), 1997. Pace (4908112) 19900300 Washizu, "Electrostatic Manipulation Of Biological Objects", Journal of Electrostatics, vol. 25, 1990, 109-123. Horejsi, et al., "Some Theoretical Aspects Of Affinity Electrophoresis", Journal of Chromatography, vol. 178, 1979, 1-13. Shieh et al. (5827482) 19981000 Hayashi et al. (3950738) 19760400 Palva et al. (4731325) 19880300 Heller et al. (5605662) 19970200 Southern, et al., "Analyzing and Comparing Nucleic Acid Sequences By Hybridization To Arrays of Oligonucleotides: Evaluation Using Experimental Models", Genomics, vol. 13, 1992, 1008-1017. Edman, et al., "Electric Field Directed Nucleic Acid Hybridization On Microchips", Nucleic Acids Research, vol. 25, No. 24, 1997, 4907-4914. Mikkelsen et al. (5312527) 19940500 Drmanac et al. (5202231) 19930400 Modrovich (4465770) 19840800 Hollis et al. (5653939) 19970800 (WO 86/03782) 19860700 McGall et al. (5412087) 19950500 (0228075) 19870700 Osman et al. (5234566) 19930800 Stanbro et al. (5114674) 19920500 Salgo et al. (3995190) 19761100 Anderson, et al., "Quantitative Filter Hybridization", Nucleic Acid Hybridization-A Practical Approach, Eds. B.D. Hames and S.J. Higgins (Washington D.C.: IRL Press), 1985, 73-111. Drmanac, et al., "Sequencing of Megabase Plus DNA By Hybridization: Theory of the Method", Genomics, vol. 4, 1989, 114-128. Hirschfeld (5242797) 19930900 Mack et al. (4816418) 19890300 Bains, "Setting a Sequence To Sequence A Sequence", Bio/Technology, vol. 10, Jul. 1992, 757-758. Drmanac, et al., "DNA Sequence Determination By Hybridization: A Strategy For Efficient Large-Scale Sequencing", Science, vol. 260, Jun. 11, 1993, 1649-1652. Fodor et al. (5445934) 19950800 Zanzucchi et al. (5593838) 19970100 Mattingly et al. (5468646) 19951100 Gruska et al. (5660701) 19970800 Beattie, et al., "Genosensor Technology", The 1992 San Diego Conference: Genetic Recognition, Nov. 1992, 1-5. Cheung et al. (5074977) 19911200 Heller et al. (6238624) 20010500 Conner, et al., "Detection of Sickle Cell βS -globin Allele By Hybridization With Synthetic Olgionucleotides", Proc. Natl. Acad. Sci. USA, vol. 80, Jan. 1983, 278-282. Heller et al. (5632957) 19970500 Fodor, et al., "Light-Directed, Spatially Addressable Parallel Chemical Synthesis", Science, vol. 251, 1992, 767-773. Horejsi, et al., "Determination Of Dissociation Constants Of Lectin Sugar Complexes By Means Of Affinity Electrophoresis", Biochimica et Biophysica Acta, vol. 499, 1977, 290-290-300. Fodor, et al., Multiplexed Biochemical Assays With Biological Chips, Nature, vol. 364, Aug. 5, 1993, 555-556. Matthews, et al., "Analytical Strategies For The Use of DNA Probes", Analytical Biochemistry, vol. 169, 1988, 1-25. Palecek, "New Trends In Electrochemical Analysis of Nucleic Acids", Biochemistry and Bioenergetics, vol. 20, 1988, 179-194. Broadbent et al. (5445525) 19950800 Cozzette et al. (5200051) 19930400 Heller et al. (6245508) 20010600 Heller et al. (5849486) 19981200 DeBoer et al. (5227265) 19930700 Sosnowski, et al., "Rapid Determination Of Single Base Mismatch Mutations In DNA Hybrids By Direct Electric Field Control", Proc. Natl. Acad. Sci. USA, vol. 94, No. 4, Feb. 1997, 1119-1123. Johnson (5166063) 19921100 Evans et al. (5219726) 19930600 (WO 90/01564) 19900200 Sheldon et al. (6129828) 20001000 Sosnowski et al. (6518022) 20030200 McMeen (5433819) 19950700 Heller et al. (6048690) 20000400 Bjornson et al. (5125748) 19920600 Petersen et al. (5192405) 19930300 Pace (4225410) 19800900 Leaback (5096807) 19920300 Fodor et al. (5744305) 19980400 Soane et al. (5126022) 19920600 Mandecki, et al., "High-Resolution Polyacrytamide Gel Electrophoresis Of Oligonucleotides Using L-Histidine Bufer", DNA, vol. 7, No. 1, 1988, 57-62. Cornell et al. (5436170) 19950700 Daughton et al. (4283773) 19810800 Saiki, "Amplification Of Genomic DNA" PCR Protocols: A Guide To Methods and Applications, (Academic Press, Inc.), 1990, 13-20. (09-145673) 19970600 Begg et al. (5681751) 19971000 Goldstein (4594135) 19860600 Patel et al. (4580895) 19860400 Stapleton et al. (5436129) 19950700 Hafeman et al. (5164319) 19921100 Heller et al. (6582660) 20030600 Hjerten et al. (5464517) 19951100 Heller et al. (6013166) 20000100 Hansen (4661451) 19870400 Begg et al. (5516698) 19960500 Anand, et al., "Pulsed Field Gel Electrophoresis", Gel Electrophoresis Of Nucleic Acids-A Practical Approach, 2d Ed., D. Rickwood and B.D. Hames (New York: IRL Press), 1985, 101-123. Durley, III et al. (5075077) 19911200 Heller et al. (6017696) 20000100 (2247889) 19920300 Fiaccabrino, et al., "Array Of Individually Addressable Microelectrodes", Sensors and Actuators B, vol. B19, 1994, 675-677. Kovacs (5965452) 19991000 Arnold et al. (2721171) 19551000 Abrams, et al., "Comprehensive Detection Of Single Base Changes In Human Genomic DNA Using Denaturing Gradient Gel Electrophoresis and a GC Clamp", Genomics, vol. 7, No. 4, Aug. 1990, 463-475. Klevan et al. (4828729) 19890500 Eggers, et al., "Biochip Technology Development", BioChip Technology Development, Lincoln Laboratory Technical Report 901, Nov. 9, 1990, 1-56. Ranki et al. (4563419) 19860100 Montgomery (6444111) 20020900 Strezoska, et al., "DNA Sequencing By Hybridization: 100 Bases Read By A Non-Gel Based Method", Proc. Natl. Acad. USA, vol. 88, Nov. 1991, 10089-10093. Washizu, et al., "Electrostatic Manipulation Of DNA In Microfabricated Structures" IEEE Transactions On Industry Applications, vol. 26, No. 6, Nov./Dec. 1990, 1165-1172. Wilding et al. (5726026) 19980300 Heller et al. (5929206) 19990700 Southern (5667667) 19970900 |
References_xml | – year: 19980500 ident: 5750015 contributor: fullname: Soane et al. – year: 19950700 ident: 5436129 contributor: fullname: Stapleton et al. – year: 19950700 ident: 5433819 contributor: fullname: McMeen – year: 19860700 ident: WO 86/03782 – year: 19970800 ident: 5653939 contributor: fullname: Hollis et al. – year: 19551000 ident: 2721171 contributor: fullname: Arnold et al. – year: 19890500 ident: 4828729 contributor: fullname: Klevan et al. – year: 19970100 ident: 5593838 contributor: fullname: Zanzucchi et al. – year: 19761100 ident: 3995190 contributor: fullname: Salgo et al. – year: 20030600 ident: 6582660 contributor: fullname: Heller et al. – year: 19911100 ident: 5064519 contributor: fullname: Tice, Jr. et al. – year: 19850800 ident: 4537861 contributor: fullname: Elings et al. – year: 19991000 ident: 5965452 contributor: fullname: Kovacs – year: 19920900 ident: 5151189 contributor: fullname: Hu et al. – year: 19920300 ident: 5096669 contributor: fullname: Lauks et al. – year: 19800900 ident: 4225410 contributor: fullname: Pace – year: 19860400 ident: 4584075 contributor: fullname: Goldstein et al. – year: 19930300 ident: 5192405 contributor: fullname: Petersen et al. – year: 19920300 ident: 5096807 contributor: fullname: Leaback – year: 20040800 ident: 6780584 contributor: fullname: Edman et al. – year: 19920600 ident: 5126022 contributor: fullname: Soane et al. – year: 19980800 ident: 5789167 contributor: fullname: Konrad – year: 19870700 ident: 0228075 – year: 19760400 ident: 3950738 contributor: fullname: Hayashi et al. – year: 19980400 ident: 5744305 contributor: fullname: Fodor et al. – year: 19911100 ident: 5063081 contributor: fullname: Cozzette et al. – year: 20000400 ident: 6054270 contributor: fullname: Southern – year: 19950800 ident: 5445525 contributor: fullname: Broadbent et al. – year: 19951100 ident: 5464517 contributor: fullname: Hjerten et al. – year: 19920500 ident: 5114674 contributor: fullname: Stanbro et al. – year: 19930800 ident: 5234566 contributor: fullname: Osman et al. – year: 20010500 ident: 6238624 contributor: fullname: Heller et al. – year: 19930400 ident: 5202231 contributor: fullname: Drmanac et al. – year: 19900300 ident: 4908112 contributor: fullname: Pace – year: 19960600 ident: 5527670 contributor: fullname: Stanley – year: 19981000 ident: 5827482 contributor: fullname: Shieh et al. – year: 19940500 ident: 5312527 contributor: fullname: Mikkelsen et al. – year: 20010600 ident: 6245508 contributor: fullname: Heller et al. – year: 20020900 ident: 6444111 contributor: fullname: Montgomery – year: 19960500 ident: 5516698 contributor: fullname: Begg et al. – year: 19900600 ident: 4936963 contributor: fullname: Mandecki et al. – year: 19911200 ident: 5075077 contributor: fullname: Durley, III et al. – year: 19930400 ident: 5200051 contributor: fullname: Cozzette et al. – year: 19970900 ident: 5667667 contributor: fullname: Southern – year: 20030200 ident: 6518022 contributor: fullname: Sosnowski et al. – year: 19981200 ident: 5849486 contributor: fullname: Heller et al. – year: 19920600 ident: 5125748 contributor: fullname: Bjornson et al. – year: 19921100 ident: 5164319 contributor: fullname: Hafeman et al. – year: 19950700 ident: 5434049 contributor: fullname: Okano et al. – year: 20000100 ident: 6013166 contributor: fullname: Heller et al. – year: 19970800 ident: 5660701 contributor: fullname: Gruska et al. – year: 19981200 ident: 5853668 contributor: fullname: Begg et al. – year: 19890400 ident: 4822566 contributor: fullname: Newman – year: 19920900 ident: 5143854 contributor: fullname: Pirrung et al. – year: 19840800 ident: 4465770 contributor: fullname: Modrovich – year: 19911200 ident: 5074977 contributor: fullname: Cheung et al. – year: 20000400 ident: 6051380 contributor: fullname: Sosnowski et al. – year: 20000400 ident: 6048690 contributor: fullname: Heller et al. – year: 19860100 ident: 4563419 contributor: fullname: Ranki et al. – year: 19950700 ident: 5436170 contributor: fullname: Cornell et al. – year: 19930900 ident: 5242797 contributor: fullname: Hirschfeld – year: 19890300 ident: 4816418 contributor: fullname: Mack et al. – year: 19951100 ident: 5468646 contributor: fullname: Mattingly et al. – year: 19971000 ident: 5681751 contributor: fullname: Begg et al. – year: 19810800 ident: 4283773 contributor: fullname: Daughton et al. – year: 19920500 ident: 5110434 contributor: fullname: Zhu et al. – year: 19881100 ident: 4787963 contributor: fullname: MacConnell – year: 19940400 ident: 5304487 contributor: fullname: Wilding et al. – year: 19920300 ident: 2247889 – year: 19980300 ident: 5726026 contributor: fullname: Wilding et al. – year: 19890200 ident: 4807161 contributor: fullname: Comfort et al. – year: 19870400 ident: 4661451 contributor: fullname: Hansen – year: 19921100 ident: 5166063 contributor: fullname: Johnson – year: 19860600 ident: 4594135 contributor: fullname: Goldstein – year: 19950500 ident: 5412087 contributor: fullname: McGall et al. – year: 19900200 ident: WO 90/01564 – year: 19880300 ident: 4731325 contributor: fullname: Palva et al. – year: 19970500 ident: 5632957 contributor: fullname: Heller et al. – year: 20000100 ident: 6017696 contributor: fullname: Heller et al. – year: 19860400 ident: 4580895 contributor: fullname: Patel et al. – year: 19970200 ident: 5605662 contributor: fullname: Heller et al. – year: 19970600 ident: 09-145673 – year: 19930700 ident: 5227265 contributor: fullname: DeBoer et al. – year: 19950800 ident: 5445934 contributor: fullname: Fodor et al. – year: 19880600 ident: 4751177 contributor: fullname: Stabinsky – year: 19990700 ident: 5929206 contributor: fullname: Heller et al. – year: 19930600 ident: 5219726 contributor: fullname: Evans et al. – year: 20001000 ident: 6129828 contributor: fullname: Sheldon et al. |
Score | 2.6977398 |
Snippet | Methods for the transport and hybridization of a nucleic acid on an electrode device by providing a low conductivity buffer with a reducing agent to the... |
SourceID | uspatents |
SourceType | Open Access Repository |
Title | Methods and materials for optimization of electronic transportation and hybridization reactions |
URI | https://image-ppubs.uspto.gov/dirsearch-public/print/downloadPdf/7314542 |
hasFullText | 1 |
inHoldings | 1 |
isFullTextHit | |
isPrint | |
link | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwfV1LSwMxEB5qEdSTomJ9kYPX6D6y3fQsXRah0oNCb0vSTfRgd0uTIv57ZzZt9aLXTDIMGeYVZr4A3BHIm1SZ5CaxCRYoqeUqqjXPdK5VkubGKCoUJ8_D8lU8zbJZD8rdLMwCzYgvURZ3v3ZL33bNlejeg-J5AH8mjMCG0Ac-m49W1dPaPuRpLDKBznhPRtTaNS7KIzhAFpiyNd79ChrFMexPu9UT6JnmFKpJ91mzY1i7M8wTg-oZJo2sRbtdbAYiWWvZz980zG_BxwORzr5_0ZTVdjsmfd1ogjsDVoxfHku-k6Z6W1GXSxVtpE7PoY_VvrkAphNpZS0JtUYIG-mRmscUZUexFcN5Jgcw-JPN5T-0KzgMrQ70enANfb9amxuMp17fdpf1Dedlg4s |
link.rule.ids | 230,309,786,808,891,64394 |
linkProvider | USPTO |
linkToPdf | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwfV1LT8MwDLamgXicQIAYzxy4BvpI1-y8rSqPTT2AtFuVrAkcWDutnSb-PXa7DS5wjRPLiuVXZH8BuCOQN6kCyY1nPSxQfMuVk2ke6FArzw-NUVQojsbd-E08TYJJC-LtLMwMzYjPUZbyflnOq6JurkT33iieN-DPhBGYE_rAKv8sVJZk9iH0XREIdMY7FGMJRX8YxYewj0wwacur8lfYiI5gN6lXj6Fl8hNIR_V3zSXD6p1hptgon2HayAq03Nl6JJIVlv38TsOqDfx4Q6SzH180Z7XZjmlfPZxQngKLhq_9mG-lSd8X1OeSOmu5_TNoY71vzoFpT1qZScKtEcI6uqemLsXZnmtFdxrIDnT-ZHPxD-0W9pJBlL48jp8v4aDpe6CnhCtoV4ulucbgWumb-t6-AX34hoU |
openUrl | ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Apatent&rft.title=Methods+and+materials+for+optimization+of+electronic+transportation+and+hybridization+reactions&rft.inventor=Smolko%2C+Daniel+D&rft.inventor=Swanson%2C+Paul+D&rft.inventor=Hodko%2C+Dalibor&rft.inventor=Canter%2C+David&rft.inventor=Haigis%2C+Robert+W&rft.inventor=Patterson%2C+Tricia&rft.number=7314542&rft.date=2008-01-01&rft.externalDBID=n%2Fa&rft.externalDocID=07314542 |