NetAffx Gene Ontology Mining Tool: a visual approach for microarray data analysis

The NetAffx Gene Ontology (GO) Mining Tool is a web-based, interactive tool that permits traversal of the GO graph in the context of microarray data. It accepts a list of Affymetrix probe sets and renders a GO graph as a heat map colored according to significance measurements. The rendered graph is...

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Published inBioinformatics Vol. 20; no. 9
Main Authors Cheng, J, Sun, S, Tracy, A, Hubbell, E, Morris, J, Valmeekam, V, Kimbrough, A, Cline, MS, Liu, G, Shigeta, R, Kulp, D, Siani-Rose, MA
Format Journal Article
LanguageEnglish
Published 12.06.2005
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Summary:The NetAffx Gene Ontology (GO) Mining Tool is a web-based, interactive tool that permits traversal of the GO graph in the context of microarray data. It accepts a list of Affymetrix probe sets and renders a GO graph as a heat map colored according to significance measurements. The rendered graph is interactive, with nodes linked to public web sites and to lists of the relevant probe sets. The GO Mining Tool provides visualization combining biological annotation with expression data, encompassing thousands of genes in one interactive view.
Bibliography:ObjectType-Article-2
SourceType-Scholarly Journals-1
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ISSN:1367-4803
1460-2059