Plasmodium DDI1 is a potential dual-therapeutic target and essential chromatin-associated protein

• Published in: bioRxiv
• Main Authors: Tanneru, Nandita, Nivya, M Angel, Adhikari, Navin, Saxena, Kanika, Rizvi, Zeba, Sudhakar, Renu, Nagwani, Amit K, Atul, Faisal Mohammed Abdul Al-Nihmi, Kota, Arun Kumar, Sijwali, Puran S
• Format: Paper
• Language: English
• Published: Cold Spring Harbor Cold Spring Harbor Laboratory Press 04.02.2022
• Subjects: Antimalarial activity; Antimalarial agents; Artemisinin; Aspartic endopeptidase; Chromatin; Ddi1 protein; Deoxyribonucleic acid; DNA; DNA damage; Drug development; Erythrocytes; HIV; Human immunodeficiency virus; Life cycles; Malaria; Parasites; Plasmodium; Proteasomes; Proteinase inhibitors; Proteins; Therapeutic applications; Ubiquitin
• DOI: 10.1101/2021.10.29.466443

DDI1 proteins are involved in a variety of cellular processes, including proteasomal degradation of specific proteins. All DDI1 proteins contain a ubiquitin-like (UBL) domain and a retroviral aspartyl protease (RVP) domain. Some DDI1 proteins also contain a ubiquitin-associated (UBA) domain. The three domains confer distinct activities to DDI1 proteins. The presence of RVP domain makes DDI1 a potential target of HIV protease inhibitors, which also block the development of malaria parasites. Hence, we investigated the DDI1 of malaria parasites to identify its roles during parasite development and potential as a therapeutic target. DDI1 proteins of Plasmodium and other Apicomplexan parasites share the UBL-RVP domain architecture, and some also contain the UBA domain. Plasmodium DDI1 is expressed across all the major life cycle stages and is essential, as conditional depletion of DDI1 protein in the mouse malaria parasite Plasmodium berghei and the human malaria parasite Plasmodium falciparum compromised parasite development. Infection of mice with DDI1 knock-down P. berghei was self-limiting and protected the recovered mice from subsequent infection with homologous as well as heterologous parasites, indicating potential of DDI1 knock-down parasites as a whole organism vaccine. P. falciparum DDI1 (PfDDI1) is associated with chromatin and DNA-protein crosslinks. PfDDI1-depleted parasites accumulated DNA-protein crosslinks and showed enhanced susceptibility to DNA damaging chemicals, indicating a role of PfDDI1 in removal of DNA-protein crosslinks. Knock-down of PfDDI1 increased susceptibility to the retroviral protease inhibitor lopinavir and antimalarial artemisinin, which suggests that simultaneous inhibition of DDI1 could potentiate antimalarial activity of these drugs. Hence, Plasmodium DDI1 could be a dual-therapeutic target for malaria control. Competing Interest Statement The authors have declared no competing interest. Footnotes * Rearrangement of figures and addition of new data