A novel role for the tumor suppressor gene ITF2 in lung tumorigenesis and chemotherapy response

• Published in: bioRxiv
• Main Authors: Pernia, Olga, Sastre-Perona, Ana, Rodriguez-Antolin, Carlos, Garcia-Guede, Alvaro, Palomares-Bralo, Maria, Rosas, Rocio, Sanchez-Cabrero, Dario, Rodriguez, Carmen, Martin-Arenas, Ruben, Pulido, Veronica, De Castro, Javier, Santisteban, Pilar, Vera, Olga, Inmaculada Ibanez De Caceres
• Format: Paper
• Language: English
• Published: Cold Spring Harbor Cold Spring Harbor Laboratory Press 15.01.2020
• Subjects: Chemotherapy; Cisplatin; Clonal deletion; Gene deletion; Gene expression; Lungs; Malignancy; Non-small cell lung carcinoma; Ovarian cancer; Platinum; Ribonucleic acid; RNA; Signal transduction; Tumor suppressor genes; Tumorigenesis; Wnt protein
• DOI: 10.1101/517169

Despite often leading to platinum resistance, platinum-based chemotherapy continues to be the standard treatment for many epithelial tumors. In this study we analyze the cytogenetic alterations that arise after cisplatin treatment providing novel insights into the molecular biology and the cellular mechanisms involved in the acquired resistance in these tumor types. Methods: In this study, we used 1 million array-CGH and qRT-PCR methodologies to identify and validate cytogenetic alterations that arise after cisplatin treatment in four lung and ovarian paired cisplatin-sensitive/resistant cell lines. We used whole transcriptome sequencing (RNA-seq), functional transfection assays and gene-pathway activity analysis in our experimental cellular models and in fresh frozen primary NSCLC tumors to identify genes with a potential role in the development of this malignancy. Results were further explored in 55 lung and ovarian primary tumors and control samples and in two extensive in silico databases (TCGA and KMplotter) with 1,926 NSCLC and 1,425 additional epithelial tumors. Results: Long-term cell exposure to platinum induces the frequent deletion of ITF2 gene. Restoration of ITF2 expression re-sensitizes tumor cells to platinum and recovers the levels of Wnt/β-catenin transcriptional activity. ITF2 expression was also frequently downregulated in NSCLC, ovarian and other epithelial tumors, predicting a worse overall survival. We also identified an inverse correlation in expression between ITF2 and HOXD9, revealing that NSCLC patients with lower expression of HOXD9 have a better overall survival rate that was independent of the tumor histology. Conclusion: We have defined the implication of ITF2 as a molecular mechanism behind the development of cisplatin resistance probably through the activation of the Wnt-signaling pathway. Our translational data suggest that ITF2 could be used as a general epithelial tumor platinum-predictive marker and have identified HOXD9 as a potential prognostic biomarker in NSCLC, a gene which expression is induced by Wnt signaling. Furthermore, this data highlights the possible role of ITF2 and HOXD9 as a novel therapeutic target for platinum resistant tumors. Footnotes * All figures have been revised. Supplemental files updated.