Pyrophosphate-Dependent ATP Formation from Acetyl Coenzyme A in Syntrophus aciditrophicus, a New Twist on ATP Formation

• Published in: mBio Vol. 7; no. 4
• Main Authors: James, Kimberly L., Ríos-Hernández, Luis A., Wofford, Neil Q., Mouttaki, Housna, Sieber, Jessica R., Sheik, Cody S., Nguyen, Hong H., Yang, Yanan, Xie, Yongming, Erde, Jonathan, Rohlin, Lars, Karr, Elizabeth A., Loo, Joseph A., Ogorzalek Loo, Rachel R., Hurst, Gregory B., Gunsalus, Robert P., Szweda, Luke I., McInerney, Michael J., Harwood, ed., Caroline S., Ferry, J. Greg, Whitman, William, Kamagata, Yoichi
• Format: Journal Article
• Language: English
• Published: United States American Society for Microbiology 07.09.2016
• Subjects: BASIC BIOLOGICAL SCIENCES; bioenergy; methanogenesis; syntrophy
• ISSN: 2161-2129; 2150-7511

Syntrophus aciditrophicus is a model syntrophic bacterium that degrades key intermediates in anaerobic decomposition, such as benzoate, cyclohexane-1-carboxylate, and certain fatty acids, to acetate when grown with hydrogen-/formate-consuming microorganisms. ATP formation coupled to acetate production is the main source for energy conservation by S. aciditrophicus. However, the absence of homologs for phosphate acetyltransferase and acetate kinase in the genome of S. aciditrophicus leaves it unclear as to how ATP is formed, as most fermentative bacteria rely on these two enzymes to synthesize ATP from acetyl coenzyme A (CoA) and phosphate. Here, we combine transcriptomic, proteomic, metabolite, and enzymatic approaches to show that S. aciditrophicus uses AMP-forming, acetyl-CoA synthetase (Acs1) for ATP synthesis from acetyl-CoA. acs1 mRNA and Acs1 were abundant in transcriptomes and proteomes, respectively, of S. aciditrophicus grown in pure culture and coculture. Cell extracts of S. aciditrophicus had low or undetectable acetate kinase and phosphate acetyltransferase activities but had high acetyl-CoA synthetase activity under all growth conditions tested. Both Acs1 purified from S. aciditrophicus and recombinantly produced Acs1 catalyzed ATP and acetate formation from acetyl-CoA, AMP, and pyrophosphate. High pyrophosphate levels and a high AMP-to-ATP ratio (5.9 ± 1.4) in S. aciditrophicus cells support the operation of Acs1 in the acetate-forming direction. Thus, S. aciditrophicus has a unique approach to conserve energy involving pyrophosphate, AMP, acetyl-CoA, and an AMP-forming, acetyl-CoA synthetase.