Multiple Sequence Alignment of the M Proteinin SARS—Associated and Other Known Coronaviruses

In this paper, we report a multiple sequence alignment result on the basis of 10 amino acid sequences of the M protein,which come from different coronaviruses (4 SARS-associated and 6 others known). The alignment model was based on the profile HMM (Hidden Markov Model), and the model training was im...

Full description

Saved in:
Bibliographic Details
Published inJournal of Shanghai University Vol. 7; no. 2; pp. 118 - 123
Main Author 史定华 周晖杰 王斌宾 顾燕红 王翼飞
Format Journal Article
LanguageEnglish
Published 2003
Subjects
SARS病毒
冠状病毒
氨基酸序列
蛋白质
隐式马尔可夫模型
非典型肺炎
Online AccessGet full text
ISSN1007-6417

Cover

More Information
Summary:In this paper, we report a multiple sequence alignment result on the basis of 10 amino acid sequences of the M protein,which come from different coronaviruses (4 SARS-associated and 6 others known). The alignment model was based on the profile HMM (Hidden Markov Model), and the model training was implemented through the SAHMM (Self-Adapting Hidden Markov Model)software developed by the authors.
Bibliography:R373.1
31-1735/N
R394
ISSN:1007-6417