Coherent X-rays reveal anomalous molecular diffusion and cage effects in crowded protein solutions

• Main Authors: Girelli, Anita, Bin, Maddalena, Filianina, Mariia, Dargasz, Michelle, Anthuparambil, Nimmi Das, Möller, Johannes, Zozulya, Alexey, Andronis, Iason, Timmermann, Sonja, Berkowicz, Sharon, Retzbach, Sebastian, Reiser, Mario, Raza, Agha Mohammad, Kowalski, Marvin, Akhundzadeh, Mohammad Sayed, Schrage, Jenny, Woo, Chang Hee, Senft, Maximilian D, Reichart, Lara Franziska, Leonau, Aliaksandr, Rajaiah, Prince Prabhu, Chèvremont, William, Seydel, Tilo, Hallmann, Jörg, Rodriguez-Fernandez, Angel, Pudell, Jan-Etienne, Brausse, Felix, Boesenberg, Ulrike, Wrigley, James, Youssef, Mohamed, Lu, Wei, Jo, Wonhyuk, Shayduk, Roman, Madsen, Anders, Lehmkühler, Felix, Paulus, Michael, Zhang, Fajun, Schreiber, Frank, Gutt, Christian, Perakis, Fivos
• Format: Journal Article
• Language: English
• Published: 11.10.2024
• Subjects: Physics - Chemical Physics; Physics - Soft Condensed Matter
• DOI: 10.48550/arxiv.2410.08873

Understanding protein motion within the cell is crucial for predicting reaction rates and macromolecular transport in the cytoplasm. A key question is how crowded environments affect protein dynamics through hydrodynamic and direct interactions at molecular length scales. Using megahertz X-ray Photon Correlation Spectroscopy (MHz-XPCS) at the European X-ray Free Electron Laser (EuXFEL), we investigate ferritin diffusion at microsecond time scales. Our results reveal anomalous diffusion, indicated by the non-exponential decay of the intensity autocorrelation function $g_2(q,t)$ at high concentrations. This behavior is consistent with the presence of cage-trapping in between the short- and long-time protein diffusion regimes. Modeling with the $\delta\gamma$-theory of hydrodynamically interacting colloidal spheres successfully reproduces the experimental data by including a scaling factor linked to the protein direct interactions. These findings offer new insights into the complex molecular motion in crowded protein solutions, with potential applications for optimizing ferritin-based drug delivery, where protein diffusion is the rate-limiting step.