Deep Learning-Based Classification of Plant Xylem Tissue from Light Micrographs

• Published in: Advances in Visual Computing pp. 237 - 248
• Main Authors: Wu, Sean, Dabagh, Reem Al, Jacobsen, Anna L., Holmlund, Helen I., Scalzo, Fabien
• Format: Book Chapter
• Language: English
• Published: Cham Springer International Publishing
• Series: Lecture Notes in Computer Science
• ISBN: 9783031207129; 3031207122
• ISSN: 0302-9743; 1611-3349
• DOI: 10.1007/978-3-031-20713-6_18

Anatomical studies of plant hydraulic traits have traditionally been conducted by manual measurements of light micrographs. An automated process could expedite analysis and broaden the scope of questions that can be asked, but such an approach would require the ability to accurately classify plant cells according to their type. Our research evaluates a deep learning-based model which accepts a cropped cell image input alongside a broader cropped image which incorporates contextual information of that cell type’s original cropped image, and learns to segregate these plant cells based off of the features of both inputs. Whilst a single cropped image classification yielded adequate results with outputs matching the ground-truth labels, we discovered that a second image input significantly bolstered the model’s learning and accuracy (98.1%), indicating that local context provides important information needed to accurately classify cells. Finally our results imply a future application of our classifier to automatic cell-type detection in xylem tissue image cross sections.