A Trace Query Language for Rule-Based Models
In this paper, we introduce a unified approach for querying simulation traces of rule-based models about the statistical behavior of individual agents. In our approach, a query consists in a trace pattern along with an expression that depends on the variables captured by this pattern. On a given tra...
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| Published in | Computational Methods in Systems Biology pp. 220 - 237 |
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| Main Authors | , , , , |
| Format | Book Chapter |
| Language | English |
| Published |
Cham
Springer International Publishing
2018
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| Series | Lecture Notes in Computer Science |
| Subjects | |
| Online Access | Get full text |
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| Summary: | In this paper, we introduce a unified approach for querying simulation traces of rule-based models about the statistical behavior of individual agents. In our approach, a query consists in a trace pattern along with an expression that depends on the variables captured by this pattern. On a given trace, it evaluates to the multiset of all values of the expression for every possible matching of the pattern. We illustrate our proposed query language on a simple example, and then discuss its semantics and implementation for the Kappa language. Finally, we provide a detailed use case where we analyze the dynamics of \documentclass[12pt]{minimal}
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| ISBN: | 9783319994284 331999428X |
| ISSN: | 0302-9743 1611-3349 |
| DOI: | 10.1007/978-3-319-99429-1_13 |