Purification and characterization of a Rieske oxygenase and its NADH-regenerating partner proteins

• Published in: Methods in enzymology Vol. 703; p. 215
• Main Authors: Barroso, Gage T, Garcia, Alejandro Arcadio, Knapp, Madison, Boggs, David G, Bridwell-Rabb, Jennifer
• Format: Journal Article
• Language: English
• Published: United States 2024
• Subjects: Bacterial Proteins - chemistry; Bacterial Proteins - genetics; Bacterial Proteins - isolation & purification; Bacterial Proteins - metabolism; Crystallography, X-Ray - methods; Electron Transport Complex III - chemistry; Electron Transport Complex III - isolation & purification; Electron Transport Complex III - metabolism; NAD - metabolism; NADP - metabolism; Oxygenases - chemistry; Oxygenases - isolation & purification; Oxygenases - metabolism; X-ray crystallography; NAD-dependent; Enzyme-mediated degradation; Catabolism; Alcohol dehydrogenase; Pollutants; Aldehyde dehydrogenase; Rieske oxygenase; Short-chain dehydrogenase/reductase
• ISSN: 1557-7988
• DOI: 10.1016/bs.mie.2024.05.015

The Rieske non-heme iron oxygenases (Rieske oxygenases) comprise a class of metalloenzymes that are involved in the biosynthesis of complex natural products and the biodegradation of aromatic pollutants. Despite this desirable catalytic repertoire, industrial implementation of Rieske oxygenases has been hindered by the multicomponent nature of these enzymes and their requirement for expensive reducing equivalents in the form of a reduced nicotinamide adenine dinucleotide cosubstrate (NAD(P)H). Fortunately, however, some Rieske oxygenases co-occur with accessory proteins, that through a downstream reaction, recycle the needed NAD(P)H for catalysis. As these pathways and accessory proteins are attractive for bioremediation applications and enzyme engineering campaigns, herein, we describe methods for assembling Rieske oxygenase pathways in vitro. Further, using the TsaMBCD pathway as a model system, in this chapter, we provide enzymatic, spectroscopic, and crystallographic methods that can be adapted to explore both Rieske oxygenases and their co-occurring accessory proteins.