Mitochondrial DNA sequence-based phylogenetic relationship of Trichiurus lepturus (Perciformes: Trichiuridae) from the Persian Gulf

• Published in: Iranian journal of veterinary research Vol. 17; no. 3; pp. 194 - 199
• Main Authors: Tamadoni Jahromi, S, Mohd Noor, S A, Pirian, K, Dehghani, R, Nazemi, M, Khazaali, A
• Format: Journal Article
• Language: English
• Published: Iran School of Veterinary Medicine, University of Shiraz 2016
• Subjects: Original; Mitochondrial DNA; Persian Gulf; 16S rDNA; Phylogeny; Trichiurus lepturus
• ISSN: 1728-1997; 2252-0589

In this study, mitochondrial DNA analysis using 16S ribosomal DNA (rDNA) was performed to investigate the phylogeny relationship of in the Persian Gulf compared to the other investigated area. The amplification of 16S rDNA resulted in a product of 600 bp in all samples. The results showed that the isolated strain belongs to showing 42 divergence sites among the same reported partial sequences of 16S rRNA gene from the other area (West Atlantic and Indo-Pacific area). Phylogeny results showed that all 18 haplotypes of the species clustered into five clades with reasonably high bootstrap support of values (>64%). Overall, the tree topology for both phylogenetic and phenetic trees for 16S rDNA was similar. Both trees exposed two major clusters, one wholly containing the haplotypes of the species belonging to Indo-Pacific area with two major sister groups including Persian Gulf specimen and the other cleared the Western Atlantic and Japan individuals clustered in another distinct clade supporting the differentiation between the two areas. Phylogenic relationship observed between the Persian Gulf and the other Indo-Pacific Individuals suggested homogeneity between two mentioned areas.