Repeatability of Radiomic Features Against Simulated Scanning Position Stochasticity Across Imaging Modalities and Cancer Subtypes: A Retrospective Multi-institutional Study on Head-and-Neck Cases
We attempted to investigate the Radiomic feature (RF) repeatability and its agreements across imaging modalities and head-and-neck cancer (HNC) subtypes via image perturbations. Contrast-enhanced computed tomography (CECT), CET1-weight, T2-weight magnetic resonance images of 231 nasopharyngeal carci...
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Published in | Computational Mathematics Modeling in Cancer Analysis Vol. 13574; pp. 21 - 34 |
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Main Authors | , , , , , , , , , , , , |
Format | Book Chapter |
Language | English |
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Switzerland
Springer
2022
Springer Nature Switzerland |
Series | Lecture Notes in Computer Science |
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Abstract | We attempted to investigate the Radiomic feature (RF) repeatability and its agreements across imaging modalities and head-and-neck cancer (HNC) subtypes via image perturbations. Contrast-enhanced computed tomography (CECT), CET1-weight, T2-weight magnetic resonance images of 231 nasopharyngeal carcinoma (NPC) patients, and CECT images of 399 oropharyngeal carcinoma (OPC) patients were retrospectively analyzed. Randomized translation and rotation were implemented to the images for mimicking scanning position stochasticity. 1288 RFs from unfiltered, Laplacian-of-Gaussian-filtered (LoG), and wavelet-filtered images were subsequently computed per perturbed image. The intra-class correlation coefficient (ICC) was calculated to assess RF repeatability. The mean absolute difference (MAD) of the ICC and the binarized repeatability consistency between image sets were adopted to evaluate its agreements across imaging modalities and HNC subtypes. Bias from feature collinearity was also investigated. All the shape RFs and the majority of RFs from unfiltered (≥ $$\ge $$ 83.5%) and LoG-filtered (≥ $$\ge $$ 93%) images showed high repeatability (ICC ≥ $$\ge $$ 0.9) in all studied datasets, whereas more than 50% of the wavelet-filtered RFs had low repeatability (ICC < 0.9). RF repeatability agreements between imaging modalities within the NPC cohort were outstanding (MAD < 0.05, consistency > 0.9) and slightly higher between the NPC and OPC cohort (MAD = 0.06, consistency = 0.89). Minimum bias from feature collinearity was observed. We urge caution when handling wavelet-filtered RFs and advise taking initiatives to exclude underperforming RFs during feature pre-selection for robust model construction. |
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AbstractList | We attempted to investigate the Radiomic feature (RF) repeatability and its agreements across imaging modalities and head-and-neck cancer (HNC) subtypes via image perturbations. Contrast-enhanced computed tomography (CECT), CET1-weight, T2-weight magnetic resonance images of 231 nasopharyngeal carcinoma (NPC) patients, and CECT images of 399 oropharyngeal carcinoma (OPC) patients were retrospectively analyzed. Randomized translation and rotation were implemented to the images for mimicking scanning position stochasticity. 1288 RFs from unfiltered, Laplacian-of-Gaussian-filtered (LoG), and wavelet-filtered images were subsequently computed per perturbed image. The intra-class correlation coefficient (ICC) was calculated to assess RF repeatability. The mean absolute difference (MAD) of the ICC and the binarized repeatability consistency between image sets were adopted to evaluate its agreements across imaging modalities and HNC subtypes. Bias from feature collinearity was also investigated. All the shape RFs and the majority of RFs from unfiltered (≥ $$\ge $$ 83.5%) and LoG-filtered (≥ $$\ge $$ 93%) images showed high repeatability (ICC ≥ $$\ge $$ 0.9) in all studied datasets, whereas more than 50% of the wavelet-filtered RFs had low repeatability (ICC < 0.9). RF repeatability agreements between imaging modalities within the NPC cohort were outstanding (MAD < 0.05, consistency > 0.9) and slightly higher between the NPC and OPC cohort (MAD = 0.06, consistency = 0.89). Minimum bias from feature collinearity was observed. We urge caution when handling wavelet-filtered RFs and advise taking initiatives to exclude underperforming RFs during feature pre-selection for robust model construction. |
Author | Teng, Xinzhi Chang, Tien Yee Amy Zhang, Yuanpeng Lam, Saikit Wu, Q. Jackie Yip, Wai Yi Ma, Zongrui Chan, Wing Chi Lawrence Cai, Jing Lee, Francis Lee, Victor Zhang, Jiang Au, Kwok-hung |
Author_xml | – sequence: 1 givenname: Jiang orcidid: 0000-0001-5807-1686 surname: Zhang fullname: Zhang, Jiang – sequence: 2 givenname: Saikit surname: Lam fullname: Lam, Saikit – sequence: 3 givenname: Xinzhi surname: Teng fullname: Teng, Xinzhi – sequence: 4 givenname: Yuanpeng surname: Zhang fullname: Zhang, Yuanpeng – sequence: 5 givenname: Zongrui surname: Ma fullname: Ma, Zongrui – sequence: 6 givenname: Francis surname: Lee fullname: Lee, Francis – sequence: 7 givenname: Kwok-hung surname: Au fullname: Au, Kwok-hung – sequence: 8 givenname: Wai Yi surname: Yip fullname: Yip, Wai Yi – sequence: 9 givenname: Tien Yee Amy surname: Chang fullname: Chang, Tien Yee Amy – sequence: 10 givenname: Wing Chi Lawrence surname: Chan fullname: Chan, Wing Chi Lawrence – sequence: 11 givenname: Victor surname: Lee fullname: Lee, Victor – sequence: 12 givenname: Q. Jackie surname: Wu fullname: Wu, Q. Jackie – sequence: 13 givenname: Jing orcidid: 0000-0001-6934-0108 surname: Cai fullname: Cai, Jing email: jing.cai@polyu.edu.hk |
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Notes | Original Abstract: We attempted to investigate the Radiomic feature (RF) repeatability and its agreements across imaging modalities and head-and-neck cancer (HNC) subtypes via image perturbations. Contrast-enhanced computed tomography (CECT), CET1-weight, T2-weight magnetic resonance images of 231 nasopharyngeal carcinoma (NPC) patients, and CECT images of 399 oropharyngeal carcinoma (OPC) patients were retrospectively analyzed. Randomized translation and rotation were implemented to the images for mimicking scanning position stochasticity. 1288 RFs from unfiltered, Laplacian-of-Gaussian-filtered (LoG), and wavelet-filtered images were subsequently computed per perturbed image. The intra-class correlation coefficient (ICC) was calculated to assess RF repeatability. The mean absolute difference (MAD) of the ICC and the binarized repeatability consistency between image sets were adopted to evaluate its agreements across imaging modalities and HNC subtypes. Bias from feature collinearity was also investigated. All the shape RFs and the majority of RFs from unfiltered (≥\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$\ge $$\end{document}83.5%) and LoG-filtered (≥\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$\ge $$\end{document}93%) images showed high repeatability (ICC ≥\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$\ge $$\end{document} 0.9) in all studied datasets, whereas more than 50% of the wavelet-filtered RFs had low repeatability (ICC < 0.9). RF repeatability agreements between imaging modalities within the NPC cohort were outstanding (MAD < 0.05, consistency > 0.9) and slightly higher between the NPC and OPC cohort (MAD = 0.06, consistency = 0.89). Minimum bias from feature collinearity was observed. We urge caution when handling wavelet-filtered RFs and advise taking initiatives to exclude underperforming RFs during feature pre-selection for robust model construction. |
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SubjectTerms | Head and neck cancer Radomics Repeatability |
Title | Repeatability of Radiomic Features Against Simulated Scanning Position Stochasticity Across Imaging Modalities and Cancer Subtypes: A Retrospective Multi-institutional Study on Head-and-Neck Cases |
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