Three-Dimensional Cardiac Electrical Activity Simulation on Cluster and Grid Platforms

Simulation of action potential propagation on cardiac tissues represents both a computational and memory intensive task. The use of detailed ionic cellular models, combined with its application into three-dimensional geometries turn simulation into a problem only affordable, in reasonable time, with...

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Published inHigh Performance Computing for Computational Science - VECPAR 2004 pp. 219 - 232
Main Authors Alonso, J. M., Ferrero, J. M., Hernández, V., Moltó, G., Monserrat, M., Saiz, J.
Format Book Chapter Conference Proceeding
LanguageEnglish
Published Berlin, Heidelberg Springer Berlin Heidelberg 2005
Springer
SeriesLecture Notes in Computer Science
Subjects
Action Potential Propagation
Applied sciences
Computer science; control theory; systems
Computer systems and distributed systems. User interface
Conjugate Gradient Method
Exact sciences and technology
Globus Toolkit
Grid Infrastructure
Parallel Execution
Software
Productivity
High performance
Parallel algorithm
Electrical activity
Grid
Action potential
Distributed system
Distributed computing
Modeling
Tissue
Three dimensional model
Electrical simulation
Simulator
Online AccessGet full text
ISBN9783540254249
3540254242
ISSN0302-9743
1611-3349
DOI10.1007/11403937_18

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Abstract Simulation of action potential propagation on cardiac tissues represents both a computational and memory intensive task. The use of detailed ionic cellular models, combined with its application into three-dimensional geometries turn simulation into a problem only affordable, in reasonable time, with High Performance Computing techniques. This paper presents a complete and efficient parallel system for the simulation of the action potential propagation on a three-dimensional parallelepiped modelization of a ventricular cardiac tissue. This simulator has been integrated into a Grid Computing system, what allows an increase of productivity in cardiac case studies by performing multiple concurrent parallel executions on distributed computational resources of a Grid.
AbstractList Simulation of action potential propagation on cardiac tissues represents both a computational and memory intensive task. The use of detailed ionic cellular models, combined with its application into three-dimensional geometries turn simulation into a problem only affordable, in reasonable time, with High Performance Computing techniques. This paper presents a complete and efficient parallel system for the simulation of the action potential propagation on a three-dimensional parallelepiped modelization of a ventricular cardiac tissue. This simulator has been integrated into a Grid Computing system, what allows an increase of productivity in cardiac case studies by performing multiple concurrent parallel executions on distributed computational resources of a Grid.
Author Saiz, J.
Ferrero, J. M.
Moltó, G.
Monserrat, M.
Hernández, V.
Alonso, J. M.
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  organization: Departamento de Ingeniería Electrónica, Universidad Politécnica de Valencia., Valencia, Spain
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Hernández, Vicente
Dongarra, Jack
Palma, José M. L. M.
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Keywords Productivity
High performance
Parallel algorithm
Electrical activity
Grid
Action potential
Distributed system
Distributed computing
Modeling
Tissue
Three dimensional model
Electrical simulation
Simulator
Language English
License CC BY 4.0
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MeetingName High performance computing for computational science (Valencia, 28-30 june 2004, revised selected and invited papers)
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Notes The authors wish to thank the financial support received from (1) the Spanish Ministry of Science and Technology to develop the projects CAMAEC (TIC2001-2686) and GRID-IT (TIC2003-01318), and (2) the Universidad Politécnica de Valencia for the CAMAV project (20020418).
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PublicationSeriesTitle Lecture Notes in Computer Science
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PublicationTitle High Performance Computing for Computational Science - VECPAR 2004
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Publisher Springer Berlin Heidelberg
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Mattern, Friedemann
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Tygar, Dough
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Vardi, Moshe Y.
Weikum, Gerhard
Sudan, Madhu
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Terzopoulos, Demetri
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Kanade, Takeo
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StartPage 219
SubjectTerms Action Potential Propagation
Applied sciences
Computer science; control theory; systems
Computer systems and distributed systems. User interface
Conjugate Gradient Method
Exact sciences and technology
Globus Toolkit
Grid Infrastructure
Parallel Execution
Software
Title Three-Dimensional Cardiac Electrical Activity Simulation on Cluster and Grid Platforms
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