Synthetic genetic circuits to uncover and enforce the OCT4 trajectories of successful reprogramming of human fibroblasts

• Published in: bioRxiv
• Main Authors: Ilia, Katherine, Shakiba, Nika, Bingham, Trevor, Jones, Ross D, Kaminski, Michael M, Aravera, Eliezer, Bruno, Simone, Palacios, Sebastian, Weiss, Ron, Collins, James J, Del Vecchio, Domitilla, Schlaeger, Thorsten M
• Format: Journal Article Paper
• Language: English
• Published: United States Cold Spring Harbor Laboratory Press 25.01.2023
• Subjects: Cell fate; Fibroblasts; Oct-4 protein; Pluripotency; Stem cells
• DOI: 10.1101/2023.01.25.525529

Reprogramming human fibroblasts to induced pluripotent stem cells (iPSCs) is inefficient, with heterogeneity among transcription factor (TF) trajectories driving divergent cell states. Nevertheless, the impact of TF dynamics on reprogramming efficiency remains uncharted. Here, we identify the successful reprogramming trajectories of the core pluripotency TF, OCT4, and design a genetic controller that enforces such trajectories with high precision. By combining a genetic circuit that generates a wide range of OCT4 trajectories with live-cell imaging, we track OCT4 trajectories with clonal resolution and find that a distinct constant OCT4 trajectory is required for colony formation. We then develop a synthetic genetic circuit that yields a tight OCT4 distribution around the identified trajectory and outperforms in terms of reprogramming efficiency other circuits that less accurately regulate OCT4. Our synthetic biology approach is generalizable for identifying and enforcing TF dynamics for cell fate programming applications.