DBD-FISH Using Specific Chromosomal Region Probes for the Study of Cervical Carcinoma Progression

• Published in: Methods in molecular biology (Clifton, N.J.) Vol. 2784; p. 271
• Main Authors: García-Vielma, Catalina, Cortés-Gutiérrez, Elva I, Fernández, José L, Dávila-Rodríguez, Martha I, Gosálvez, Jaime
• Format: Journal Article
• Language: English
• Published: United States 2024
• Subjects: DBD-FISH; Microgel embedding; Cervical carcinoma; DNA breakage detection-fluorescence in situ hybridization; DNA damage
• ISSN: 1940-6029
• DOI: 10.1007/978-1-0716-3766-1_18

Genomic instability is an important biomarker in the progression of cervical carcinoma. DBD-FISH (DNA breakage detection-fluorescence in situ hybridization) is a sensitive method that detects strand breaks, alkali-labile sites, and incomplete DNA excision repair in cells of the cervical epithelium. This technique integrates the microgel immersion of cells from a vaginal lesion scraping and the DNA unwinding treatment with the capacity of FISH integrated into digital image analysis. Cells captured within an agarose matrix are lysed and submerged in an alkaline unwinding solution that generates single-stranded DNA motifs at the ends of internal DNA strand breaks. After neutralization, the microgel is dehydrated and the cells are incubated with DNA-labeled probes. The quantity of a hybridized probe at a target sequence corresponds to the measure of the single-stranded DNA produced during the unwinding step, which is equivalent to the degree of local DNA breakage. DNA damage does not show uniformly throughout the entire DNA of a cell; rather, it is confined to specific chromosomal sites. In this chapter, an overview of the technique is supplied, focusing on its ability for assessing the association between DNA damage in specific sequences and in the progressive stages of cervical carcinoma.