DNA-metabarcoding of cyanobacteria and microalgae in chernozem soils of temperate continental climate of the forest-steppe zone of Eurasia under different degrees of agrotechnology intensification

• Published in: World journal of microbiology & biotechnology Vol. 40; no. 11; p. 351
• Main Authors: Lukyanov, Vyacheslav, Gaysina, Lira, Bukin, Yurij, Renganathan, Prabhaharan, Tupikin, Alexey
• Format: Journal Article
• Language: English
• Published: Dordrecht Springer Netherlands 16.10.2024; Springer Nature B.V
• Subjects: Agricultural practices; Agriculture; Algae; Applied Microbiology; Aquatic microorganisms; Arable land; Bacteria - classification; Bacteria - genetics; Bacteria - isolation & purification; Biochemistry; Biodiversity; Biomedical and Life Sciences; Biotechnology; Climate; Comparative analysis; Crop rotation; Cultivation; Cyanobacteria; Cyanobacteria - classification; Cyanobacteria - genetics; Cyanobacteria - isolation & purification; Deoxyribonucleic acid; DNA; DNA barcoding; DNA Barcoding, Taxonomic; DNA structure; DNA, Bacterial - genetics; Dominant species; Environmental Engineering/Biotechnology; Eukaryotes; Fertilizers; Forests; Fungi - classification; Fungi - genetics; Fungi - isolation & purification; Fungiculture; Genotypes; Grain cultivation; Life Sciences; Microalgae; Microalgae - classification; Microalgae - genetics; Microbiology; Microorganisms; Nutrients; Phylogeny; Prokaryotes; RNA processing; RNA, Ribosomal, 16S - genetics; RNA, Ribosomal, 18S - genetics; rRNA 16S; rRNA 18S; Soil - chemistry; Soil analysis; Soil formation; Soil Microbiology; Soil microorganisms; Species diversity; Steppes; Triticum - microbiology; Winter wheat; 16S rRNA; Agrotechnologies; Soil blooming; 18S rRNA; Cyanobacteria; Microalgae; Chernozem soils; Algal communities; DNA-metabarcoding
• ISSN: 0959-3993; 1573-0972; 1573-0972
• DOI: 10.1007/s11274-024-04133-5

Chernozem soil is a valuable resource and contains a great diversity of microorganisms that play a global role in the process of soil formation, the species diversity of which has changed over the last five years under the influence of different agrotechnologies. For the first time, under the conditions of the Central Chernozem region, grain and fallow crop rotation, studies using the DNA-metabarcoding method were carried out to study the taxonomic structure of bacteria, fungi, cyanobacteria, and microalgae communities in the arable horizon of typical medium loamy chernozem under winter wheat cultivation. A comparative analysis of the composition of the genotypes showed significant differences in the presented level of mineral nutrition of the soil NPK (60) and NPK (100) compared with the control variant. After processing the 16S and 18S rRNA datasets, a similar trend of decreasing numbers of pro- and eukaryotic species was found from 6296 (control without MF) to 5310 with NPK (60) and to 4643 with NPK (100), respectively. The Chao1 index indicated that the expected diversity within the prokaryotic group was higher in the control without MF at 211, but decreased to 182 and 193 with NPK (60) and NPK (100) fertilizers, respectively. Analysis of the eukaryotic group revealed a 2.6- and 2.9-fold decrease in diversity by class and genus, respectively, depending on the nutritional levels in agrotechnologies, owing to the use of MF. In the prokaryotic community, Alphaproteobacteria microorganisms predominated at an amount of 14.20–14.46%, with Cyanophyceae accounting for 5.2–9.9%. The diversity of eukaryotes was smaller than the number of classes of prokaryotes; the main dominant were Zygnematophyceae 19.5–41%, Chlorophyceae occupied 10.4–15.8%. On the other hand, the doses of fertilizers used contributed to the emergence of dominant species adapted to high doses of mineral nutrients for plants.