An enhancer-AAV toolbox to target and manipulate distinct interneuron subtypes

• Published in: bioRxiv
• Main Authors: Furlanis, Elisabetta, Dai, Min, Leyva Garcia, Brenda, Vergara, Josselyn, Pereira, Ana, Pelkey, Kenneth, Tran, Thien, Gorissen, Bram L, Vlacho, Anna, Hairston, Ariel, Huang, Shuhan, Dwivedi, Deepanjali, Du, Sarah, Wills, Sara, McMahon, Justin, Lee, Anthony T, Chang, Edward F, Razzaq, Taha, Qazi, Ahmed, Vargish, Geoffrey, Yuan, Xiaoqing, Caccavano, Adam, Hunt, Steven, Chittajallu, Ramesh, McLean, Nadiya, Hewit, Lauren, Paranzino, Emily, Rice, Haley, Cummins, Alex C, Plotnikova, Anya, Mohanty, Arya, Tangen, Anne Claire, Shin, Jung Hoon, Azadi, Reza, Eldridge, Mark A G, Alvarez, Veronica A, Averbeck, Bruno B, Alyahyay, Mansour, Reyes Vallejo, Tania, Soheib, Mohammed, Vattino, Lucas G, MacGregor, Cathryn P, Banks, Emmie, Olah, Viktor Janos, Naskar, Shovan, Hill, Sophie, Liebergall, Sophie, Badiani, Rohan, Hyde, Lili, Xu, Qing, Allaway, Kathryn C, Goldberg, Ethan M, Nowakowski, Tomasz J, Lee, Soohyun, Takesian, Anne E, Ibrahim, Leena A, Iqbal, Asim, McBain, Chris J, Dimidschstein, Jordane, Fishell, Gord, Wang, Yating
• Format: Journal Article
• Language: English
• Published: United States Cold Spring Harbor Laboratory 06.09.2024
• ISSN: 2692-8205; 2692-8205
• DOI: 10.1101/2024.07.17.603924

In recent years, we and others have identified a number of enhancers that, when incorporated into rAAV vectors, can restrict the transgene expression to particular neuronal populations. Yet, viral tools to access and manipulate fine neuronal subtypes are still limited. Here, we performed systematic analysis of single cell genomic data to identify enhancer candidates for each of the cortical interneuron subtypes. We established a set of enhancer-AAV tools that are highly specific for distinct cortical interneuron populations and striatal cholinergic neurons. These enhancers, when used in the context of different effectors, can target (fluorescent proteins), observe activity (GCaMP) and manipulate (opto- or chemo-genetics) specific neuronal subtypes. We also validated our enhancer-AAV tools across species. Thus, we provide the field with a powerful set of tools to study neural circuits and functions and to develop precise and targeted therapy.