Experimental and theoretical elucidation of catalytic pathways in TiO2-initiated prebiotic polymerization

• Published in: Physical chemistry chemical physics : PCCP Vol. 21; no. 10; pp. 5435 - 5447
• Main Authors: Barcaro, Giovanni, Sementa, Luca, Carravetta, Vincenzo, Yano, Taka-aki, Hara, Masahiko, Monti, Susanna
• Format: Journal Article
• Language: English
• Published: Cambridge Royal Society of Chemistry 2019
• Subjects: Catalysis; Computer simulation; Density functional theory; Desorption; Dimerization; Glycine; High temperature; Molecular dynamics; Organic chemistry; Photoelectric emission; Polymerization; Quantum chemistry; Substrates; Thermal desorption spectroscopy; Titanium dioxide; Water chemistry; X ray photoelectron spectroscopy
• ISSN: 1463-9076; 1463-9084
• DOI: 10.1039/c9cp00167k

The tendency of glycine to form polymer chains on a rutile(110) surface under wet/dry conditions (dry–wet cycles at high temperature) is studied through a conjunction of surface sensitive experimental techniques and sequential periodic multilevel calculations that mimics the experimental procedures with models of decreasing complexity and increasing accuracy. X-ray photoemission spectroscopy (XPS) and thermal desorption spectroscopy (TDS) experimentally confirmed that the dry–wet cycles lead to Gly polymerization on the oxide support. This was supported by all the theoretical characterizations. First, classical reactive molecular dynamics (MD) simulations based on the ReaxFF approach were used to reproduce the adsorption of the experimental glycine solution droplets sprayed onto an oxide support and to identify the most probable arrangement of the molecules that triggered the polymerization mechanisms. Then, quantum chemistry density functional tight binding (DF-TB) MDs and static density functional theory (DFT) calculations were carried out to further explore favorable configurations and to evaluate the energy barriers of the most promising reaction pathways for the peptide bond-formation reactions. The results confirmed the fundamental role played by the substrate to thermodynamically and kinetically favor the process and disclosed its main function as an immobilizing agent: the molecules accommodated in the surface channels close to each other were the ones starting the key events of the dimerization process and the most favorable mechanism was the one where a water molecule acted as a proton exchange mediator in the condensation process.