Non-adaptive group testing: Explicit bounds and novel algorithms

• Published in: 2012 IEEE International Symposium on Information Theory Proceedings pp. 1837 - 1841
• Main Authors: Chun Lam Chan, Jaggi, S., Saligrama, V., Agnihotri, S.
• Format: Conference Proceeding
• Language: English
• Published: IEEE 01.07.2012
• Subjects: Algorithm design and analysis; Compressed sensing; Decoding; Noise; Noise measurement; Testing; Vectors
• ISBN: 9781467325806; 1467325805
• ISSN: 2157-8095; 2157-8117
• DOI: 10.1109/ISIT.2012.6283597

We present computationally efficient and provably correct algorithms with near-optimal sample-complexity for noisy non-adaptive group testing. Group testing involves grouping arbitrary subsets of items into pools. Each pool is then tested to identify the defective items, which are usually assumed to be sparsely distributed. We consider random non-adaptive pooling where pools are selected randomly and independently of the test outcomes. Our noisy scenario accounts for both false negatives and false positives for the test outcomes. Inspired by compressive sensing algorithms we introduce four novel computationally efficient decoding algorithms for group testing, CBP via Linear Programming (CBP-LP), NCBP-LP (Noisy CBP-LP), and the two related algorithms NCBP-SLP+ and NCBP-SLP- ("Simple" NCBP-LP). The first of these algorithms deals with the noiseless measurement scenario, and the next three with the noisy measurement scenario. We derive explicit sample-complexity bounds - with all constants made explicit - for these algorithms as a function of the desired error probability; the noise parameters; the number of items; and the size of the defective set (or an upper bound on it). We show that the sample-complexities of our algorithms are near-optimal with respect to known information-theoretic bounds.