Genome-Wide Analysis of WRKY Transcription Factors Involved in Abiotic Stress and ABA Response in ICaragana korshinskii/I

• Published in: International journal of molecular sciences Vol. 24; no. 11
• Main Authors: Liu, Jinhua, Li, Guojing, Wang, Ruigang, Wang, Guangxia, Wan, Yongqing
• Format: Journal Article
• Language: English
• Published: MDPI AG 01.05.2023
• Subjects: Analysis; Chromosomes; DNA binding proteins; Evolution; Genetic aspects; Genomes; Genomics; Phylogeny; Plants
• ISSN: 1422-0067; 1422-0067
• DOI: 10.3390/ijms24119519

The WRKY transcription factor family plays a vital role in plant development and environmental response. However, the information of WRKY genes at the genome-wide level is rarely reported in Caragana korshinskii. In this study, we identified and renamed 86 CkWRKY genes, which were further classified into three groups through phylogenetic analysis. Most of these WRKY genes were clustered and distributed on eight chromosomes. Multiple sequence alignment revealed that the conserved domain (WRKYGQK) of the CkWRKYs was basically consistent, but there were also six variation types (WRKYGKK, GRKYGQK, WRMYGQK, WRKYGHK, WKKYEEK and RRKYGQK) that appeared. The motif composition of the CkWRKYs was quite conservative in each group. In general, the number of WRKY genes gradually increased from lower to higher plant species in the evolutionary analysis of 28 species, with some exceptions. Transcriptomics data and RT-qPCR analysis showed that the CkWRKYs in different groups were involved in abiotic stresses and ABA response. Our results provided a basis for the functional characterization of the CkWRKYs involved in stress resistance in C. korshinskii.