Activation and Allosteric Modulation of Human [mu] Opioid Receptor in Molecular Dynamics

• Published in: Journal of chemical information and modeling Vol. 55; no. 11; p. 2421
• Main Authors: Bartuzi, Damian, Kaczor, Agnieszka A, Matosiuk, Dariusz
• Format: Journal Article
• Language: English
• Published: Washington American Chemical Society 23.11.2015
• Subjects: Chemistry; Informatics; Ligands; Narcotics; Proteins
• ISSN: 1549-9596; 1549-960X
• DOI: 10.1021/acs.jcim.5b00280

Allosteric protein modulation has gained increasing attention in drug design. Its application as a mechanism of action could bring forth safer and more effective medicines. Targeting opioid receptors with allosteric modulators can result in better treatment of pain, depression, and respiratory and immune disorders. In this work we use recent reports on negative modulators of ... opioid receptor as a starting point for identification of allosteric sites and mechanisms of opioid receptor modulation using homology modeling and docking and molecular dynamics studies. An allosteric binding site description is presented. Results suggest a shared binding region for lipophilic allosteric ligands, reveal possible differences in the modulation mechanism between cannabinoids and salvinorin A, and show ambiguous properties of the latter. Also, they emphasize the importance of native-like environment in molecular dynamics simulations and uncover relationships between modulator and orthosteric ligand binding and receptor behavior. Relationships between ligands, transmission switch, and hydrophobic lock are analyzed. (ProQuest: ... denotes formulae/symbols omitted.)