Database: web application for visualization of the cumulated RNAseq data against the salicylic acid treatment of Arabidopsis thaliana

Plants have adapted to survive under adverse conditions or exploit favorable conditions in response to their environment as sessile creatures. In a way of plant adaptation, plant hormones have been evolved to efficiently use limited resources. Plant hormones including auxin, jasmonic acid, salicylic...

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Published inBMC plant biology Vol. 20; no. 1
Main Authors Woo, Dong U, Jeon, Ho Hwi, Park, Halim, Park, Jin Hwa, Lee, Yejin, Kang, Yang Jae
Format Journal Article
LanguageEnglish
Published BioMed Central Ltd 02.10.2020
Subjects
Arabidopsis thaliana
Ethylene
Gene expression
Genomics
Internet software
Machine learning
Phenols (Class of compounds)
Plant evolution
Plant genetics
Plant hormones
RNA sequencing
Visualization (Computer)
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Summary:Plants have adapted to survive under adverse conditions or exploit favorable conditions in response to their environment as sessile creatures. In a way of plant adaptation, plant hormones have been evolved to efficiently use limited resources. Plant hormones including auxin, jasmonic acid, salicylic acid, and ethylene have been studied to reveal their role in plant adaptation against their environment by phenotypic observation with experimental design such as mutation on hormone receptors and treatment / non-treatment of plant hormones along with other environmental conditions. Using this database, we created a web application (http://pgl.gnu.ac.kr/hormoneDB/) that lists hormone-related or hormone-affected genes and visualizes the boxplot of the gene expression of selected genes. This web application eventually aids the functional genomics researchers who want to gather the cases of the gene responses by the hormones.
ISSN:1471-2229
1471-2229
DOI:10.1186/s12870-020-02659-y