novel phospholipase B from Streptomyces sp. NA684 – purification, characterization, gene cloning, extracellular production and prediction of the catalytic residues

• Published in: The FEBS journal Vol. 280; no. 16; pp. 3780 - 3796
• Main Authors: Matsumoto, Yusaku, Mineta, Shingo, Murayama, Kazutaka, Sugimori, Daisuke
• Format: Journal Article
• Language: English
• Published: England Published by Blackwell Pub. on behalf of the Federation of European Biochemical Societies 01.08.2013; Blackwell Publishing Ltd
• Subjects: active sites; Amino Acid Sequence; Amino acids; Bacterial Proteins - chemistry; Bacterial Proteins - genetics; Bacterial Proteins - isolation & purification; Bacterial Proteins - metabolism; Bacteriology; Base Sequence; Catalytic Domain; characterization; enzyme mechanisms; Enzymes; extracellular production; fatty acids; genes; Histidine - chemistry; hydrolysis; Kinetics; lysophosphatidylcholine; Lysophosphatidylcholines - metabolism; lysophospholipase; Lysophospholipase - chemistry; Lysophospholipase - genetics; Lysophospholipase - isolation & purification; Lysophospholipase - metabolism; molecular cloning; Molecular Sequence Data; Molecular Weight; mutagenesis; Mutagenesis, Site-Directed; Mutant Proteins - chemistry; Mutant Proteins - isolation & purification; Mutant Proteins - metabolism; open reading frames; Phosphatidic Acids - metabolism; Phosphatidylcholines - metabolism; phosphatidylethanolamines; phosphatidylserines; phospholipase B; prediction; Protein Sorting Signals; Proteins; Recombinant Proteins - chemistry; Recombinant Proteins - isolation & purification; Recombinant Proteins - metabolism; Sequence Homology, Amino Acid; Serine - chemistry; signal peptide; Streptomyces; Streptomyces - enzymology; Streptomyces lividans; Streptomyces sp; Substrate Specificity; extracellular production; phospholipase B; characterization; Streptomyces sp; enzyme mechanisms
• ISSN: 1742-464X; 1742-4658
• DOI: 10.1111/febs.12366

A novel metal ion‐independent phospholipase B (PLB₆₈₄) from Streptomyces sp. strain NA684 was purified 264‐fold from the culture supernatant with 2.85% recovery (6330 U·mg protein⁻¹). The enzyme functions as a monomer with a molecular mass of 38.9 kDa. Maximum activity was found at pH 8.4 and 50 °C. The substrate specificity was in the order: phosphatidylcholine ≥ phosphatidic acid ≥ lysophosphatidylcholine > phosphatidylserine > phosphatidylinositol > phosphatidylglycerol. The enzyme did not hydrolyze phosphatidylethanolamine, tristearin and dipalmitin. PLB₆₈₄ hydrolyzed lysophosphatidylcholine and diacylphosphatidylcholine, and lysophosphatidylcholine was primarily produced during the early stages of phosphatidylcholine hydrolysis. The apparent Kₘ, Vₘₐₓ and kcₐₜ for hydrolysis of dimyristoyl phosphatidic acid were 14.5 mm, 15.8 mmol·min⁻¹·mg protein⁻¹ and 1.02 × 10⁴ s⁻¹, respectively. The positional specificity of 1‐palmitoyl‐2‐oleoyl‐sn‐glycero‐3‐phosphocholine hydrolysis was investigated using GC. In the reaction equilibrium, the molar ratio of released fatty acids (sn‐1 : sn‐2) was 45 : 55. The ORF of the gene is 1239 bp in length and codes for a 30‐amino acid signal peptide and a 382‐amino acid mature enzyme. The deduced amino acid sequence of PLB₆₈₄ shows 60% identity to a uncharacterized protein of Streptomyces auratus AGR0001 (UniProt accession number: J1RQY0). The extracellular production of PLB₆₈₄ was achieved using a pUC702 expression vector and Streptomyces lividans as the host. Mutagenesis analysis showed that Ser12 is essential for the catalytic function of PLB₆₈₄ and that the active site may include residues Ser330 and His332.