Microdeletion on Xq27.1 in a Chinese VACTERL-Like Family with Kidney and Anal Anomalies

• Published in: Biomedical and environmental sciences Vol. 37; no. 5; pp. 503 - 510
• Main Authors: LI, Min, ZHANG, Yu Lan, ZHANG, Kai Li, LI, Ping Ping, LYU, Yu Han, LIANG, Ya Xin, YU, Yue
• Format: Journal Article
• Language: English
• Published: China Elsevier B.V 20.05.2024
• Subjects: Adult; Anal Canal - abnormalities; China; Chromosome Deletion; Chromosomes, Human, X - genetics; East Asian People - genetics; Esophagus - abnormalities; Female; Heart Defects, Congenital; Humans; Kidney - abnormalities; Limb Deformities, Congenital - genetics; Male; Pedigree; Prenatal diagnosis; Spine - abnormalities; Trachea - abnormalities; VACTERL; whole-exome sequencing; whole-genome sequencing; X-linked; China; X-linked; VACTERL; Prenatal diagnosis; whole-exome sequencing; whole-genome sequencing
• ISSN: 0895-3988; 2214-0190
• DOI: 10.3967/bes2024.055

VATER/VACTERL-like association is associated with adverse pregnancy outcomes. Genetic evidence of this disorder is sporadic. In this study, we aimed to provide genetic insights to improve the diagnosis of VACTERL. We have described a Chinese family in which four members were affected by renal defects or agenesis, anal atresia, and anovaginal fistula, which is consistent with the diagnosis of a VACTERL-like association. Pedigree and genetic analyses were conducted using genome and exome sequencing. Segregation analysis revealed the presence of a recessive X-linked microdeletion in two living affected individuals, harboring a 196–380 kb microdeletion on Xq27.1, which was identified by familial exome sequencing. Genome sequencing was performed on the affected male, confirming a -196 kb microdeletion in Xq27.1, which included a 28% loss of the CDR-1 gene. Four family members were included in the co-segregation analysis, and only VACTERL-like cases with microdeletions were reported in X27.1. These results suggest that the 196–380 kb microdeletion in Xq27.1 could be a possible cause of the VATER/VACTERL-like association. However, further genetic and functional analyses are required to confirm or rule out genetic background as the definitive cause of the VACTERL association.