Whole exome sequencing reveals novel EYS mutations in Chinese patients with autosomal recessive retinitis pigmentosa

• Published in: Molecular vision Vol. 25; no. 1; pp. 35 - 46
• Main Authors: Xiao, Xiaoqiang, Cao, Yingjie, Chen, Shaowan, Chen, Min, Mai, Xiaoting, Zheng, Yuqian, Zhuang, Xi, Ng, Tsz Kin, Chen, Haoyu
• Format: Journal Article
• Language: English
• Published: United States Molecular Vision 2019
• Subjects: Adult; Amino Acid Substitution; Asian Continental Ancestry Group; Autosomal recessive inheritance; Base Sequence; Bioinformatics; C-Terminus; Computational Biology - methods; DNA sequencing; Exome; Eye Proteins - genetics; Female; Gene Expression; Genes, Recessive; Heredity; Heterozygote; Homozygote; Humans; Male; Middle Aged; Mutation; Pedigree; Peripheral blood; Phenotypes; Retina; Retinitis; Retinitis pigmentosa; Retinitis Pigmentosa - diagnosis; Retinitis Pigmentosa - ethnology; Retinitis Pigmentosa - genetics; Retinitis Pigmentosa - pathology; Whole Exome Sequencing
• ISSN: 1090-0535; 1090-0535

Retinitis pigmentosa (RP) belongs to a group of inherited retinal diseases with high genetic heterogeneity. This study aimed at identifying the disease-causing variants in patients with autosomal recessive RP. Three RP families with autosomal recessive inheritance and 139 sporadic RP patients were included. Complete ophthalmic examinations were conducted in all the study subjects. DNA samples were extracted from patients' peripheral blood for whole exome sequencing (WES) analysis. Direct Sanger sequencing was conducted for validating the identified mutations and cosegregation pattern in the RP families. One novel (c.7492G>C:p.Ala2498Pro and c.8422C>T:p.Ala2808Thr) and one reported (c.8012T>A:p.Leu2671X and 6416G>A:p.Cys2139Tyr) pair of compound heterozygous mutations, as well as one reported compound homozygous mutation (c.6416G>A:p.Cys2139Tyr/c.8012T>A:p.Leu2671X), were identified in the gene from three families with autosomal recessive RP. All the mutations were cosegregated with the RP phenotype in the RP families. For the sporadic RP patients, seven novel and seven reported variants were identified in 19 patients, including two novel frameshift (c.8301dupT:p.Asp2767fs and c.9437_9440del:p.Glu3146fs), three novel missense (c.8297G>C:p.Gly2766Ala, c.9052T>C:p.Trp3018Arg, and c.8907T>G:p.Cys2969Trp), and one nonsense (c.490C>T:p.Arg164X) variants. All the novel mutations were confirmed by Sanger sequencing. Most of the variants were located at the C-terminus of the EYS protein. Bioinformatics analyses indicated that all detected variants were damaging or possibly damaging. This study identified eight novel variants and expanded the spectrum of mutations in Chinese RP patients.