Epitope-based vaccine design yields fusion peptide-directed antibodies that neutralize diverse strains of HIV-1

A central goal of HIV-1 vaccine research is the elicitation of antibodies capable of neutralizing diverse primary isolates of HIV-1. Here we show that focusing the immune response to exposed N-terminal residues of the fusion peptide, a critical component of the viral entry machinery and the epitope...

Full description

Saved in:
Bibliographic Details
Published inNature medicine Vol. 24; no. 6; pp. 857 - 867
Main Authors Xu, Kai, Acharya, Priyamvada, Kong, Rui, Cheng, Cheng, Chuang, Gwo-Yu, Liu, Kevin, Louder, Mark K., O’Dell, Sijy, Rawi, Reda, Sastry, Mallika, Shen, Chen-Hsiang, Zhang, Baoshan, Zhou, Tongqing, Asokan, Mangaiarkarasi, Bailer, Robert T., Chambers, Michael, Chen, Xuejun, Choi, Chang W., Dandey, Venkata P., Doria-Rose, Nicole A., Druz, Aliaksandr, Eng, Edward T., Farney, S. Katie, Foulds, Kathryn E., Geng, Hui, Georgiev, Ivelin S., Gorman, Jason, Hill, Kurt R., Jafari, Alexander J., Kwon, Young D., Lai, Yen-Ting, Lemmin, Thomas, McKee, Krisha, Ohr, Tiffany Y., Ou, Li, Peng, Dongjun, Rowshan, Ariana P., Sheng, Zizhang, Todd, John-Paul, Tsybovsky, Yaroslav, Viox, Elise G., Wang, Yiran, Wei, Hui, Yang, Yongping, Zhou, Amy F., Chen, Rui, Yang, Lu, Scorpio, Diana G., McDermott, Adrian B., Shapiro, Lawrence, Carragher, Bridget, Potter, Clinton S., Mascola, John R., Kwong, Peter D.
Format Journal Article
LanguageEnglish
Published New York Nature Publishing Group US 01.06.2018
Nature Publishing Group
Subjects
Online AccessGet full text

Cover

Loading…
More Information
Summary:A central goal of HIV-1 vaccine research is the elicitation of antibodies capable of neutralizing diverse primary isolates of HIV-1. Here we show that focusing the immune response to exposed N-terminal residues of the fusion peptide, a critical component of the viral entry machinery and the epitope of antibodies elicited by HIV-1 infection, through immunization with fusion peptide-coupled carriers and prefusion stabilized envelope trimers, induces cross-clade neutralizing responses. In mice, these immunogens elicited monoclonal antibodies capable of neutralizing up to 31% of a cross-clade panel of 208 HIV-1 strains. Crystal and cryoelectron microscopy structures of these antibodies revealed fusion peptide conformational diversity as a molecular explanation for the cross-clade neutralization. Immunization of guinea pigs and rhesus macaques induced similarly broad fusion peptide-directed neutralizing responses, suggesting translatability. The N terminus of the HIV-1 fusion peptide is thus a promising target of vaccine efforts aimed at eliciting broadly neutralizing antibodies. An alternative HIV vaccine design facilitates generation of HIV-1-antibodies, with promising neutralization breadth in rodents and nonhuman primates.
Bibliography:ObjectType-Article-1
SourceType-Scholarly Journals-1
ObjectType-Feature-2
content type line 23
Simons Foundation
W-31-109-Eng-38; HHSN261200800001E; R01 AI131722; SF349247; GM103310; F00316; OD019994
Agouron Institute
USDOE Office of Science (SC), Basic Energy Sciences (BES)
National Institute of General Medical Sciences
National Institutes of Health (NIH)
AUTHOR CONTRIBUTIONS
K.X. conceived and led the project, as well as determined all crystal structures; P.A. determined cryo-EM structures; R.K. and N.A.D.-R. coordinated neutralization assessments; C.C. coordinated guinea pig and NHP immunization; G.-Y.C. coordinated statistical and bioinformatical analysis; K.L. prepared proteins and co-determined crystal structures; M.K.L. and R.T.B. assessed antibody neutralization in the large panel; C.-H.S. performed antibody sequence analysis; M.S. performed all Alanine/Glycine scans; B.Z. prepared antibodies for large panel, and performed various binding analysis; T.Z. performed SPR analysis, calculated antibody approaching angel to trimer and made antibody neutralization dendrograms; M.A. performed antibody autoreactivity test; I.S.G. performed antibody neutralization finger-print analysis; T.L. performed molecular dynamics analysis; S.D., K.M., C.W.C., E.G.V. and A.P.R. co-performed neutralization assay; A.D., D.P., B.Z. and Y.Y. helped with protein expression; E.T.E., V.P.D. and H.W. helped with cryo-EM structures; X.C., H.G., J.G., M.S., and Y.D.K. performed protein purification; K.R.H, A.J.J., K.E.F, D.G.S, J.-P.T assisted in NHP study; Y.-T.L. and Y.W. assisted with X-ray crystal datasets processing; B.Z., L.O. and M.C. helped with immunogen preparation and characterization; R.R. and K.F. performed statistical and bioinformatical analysis; Z.S. performed antibody gene comparison; Y.T. performed negative-stain EM; T.Y.O participated in immunogen binding test; A.F.Z. helped with SPR assay; R.C. and L.Y. supervised the research team in GenScript; A.B.M supervised MSD-based immunogen antigenicity characterization; L.S. supervised antibody gene analysis and comparison; B.C. and C.S.P. supervised cryo-EM studies; K.X., L.S., J.R.M. and P.D.K. wrote the manuscript, and all authors read, edited and approved the manuscript. J.R.M. and P.D.K. supervised the study.
These authors contributed equally
ISSN:1078-8956
1546-170X
1546-170X
DOI:10.1038/s41591-018-0042-6