A retrospective observational study of 1000 consecutive patients tested with the FilmArray® Meningitis/Encephalitis panel: clinical diagnosis at discharge and microbiological findings

• Published in: Scientific reports Vol. 14; no. 1; pp. 4015 - 9
• Main Authors: Sunnerhagen, Torgny, Widén, Johan, Handhal, Sahar, Özkaya Şahin, Gülşen
• Format: Journal Article
• Language: English
• Published: London Nature Publishing Group UK 18.02.2024; Nature Publishing Group; Nature Portfolio
• Subjects: 631/326/107; 692/308/409; 692/699/255; 692/700/139/1420; Central nervous system; Cerebrospinal fluid; Clinical Laboratory Medicine; Clinical Medicine; Cranial nerves; Diagnosis; E coli; Encephalitis; Escherichia coli; Haemophilus influenzae; Herpes simplex; Herpes viruses; Humanities and Social Sciences; Infectious diseases; Infectious Medicine; Infektionsmedicin; Inflammation; Klinisk laboratoriemedicin; Klinisk medicin; Listeria monocytogenes; Medical and Health Sciences; Medical records; Medicin och hälsovetenskap; Meningitis; multidisciplinary; Observational studies; Patients; Science; Science (multidisciplinary); Seizures; Streptococcus agalactiae; Streptococcus infections; Streptococcus pneumoniae; Varicella; Viruses
• ISSN: 2045-2322; 2045-2322
• DOI: 10.1038/s41598-024-54621-9

FilmArray® Meningitis/Encephalitis panel (FAME-p) is used to diagnose central nervous system (CNS) infections. In this study, we investigated performance of FAME-p compared to comparator assays (CA), and for the first time, clinical diagnosis at discharge (CDD). 1000 consecutive patients with a cerebrospinal fluid (CSF) sample analyzed with FAME-p were identified. As CA, culture, polymerase chain reaction and cryptococcal antigen test were used. Medical records of patients were obtained. A CDD of CNS infection was made in 139 of 1000 CSF samples. FAME-p was positive in 66 samples with 44 viral and 22 bacterial agents. Thirteen FAME-p findings were not confirmed by CA, with four discrepant results remaining after comparison with the CDD. Positive percentage agreement (PPA) calculated against CA was 100%. Negative percentage agreement (NPA) calculated against CA was 94.4–99.8% for Haemophilus influenzae , Listeria monocytogenes , Streptococcus agalactiae , S. pneumoniae and varicella-zoster virus (VZV). NPA calculated against CDD was higher (compared to CA) for L. monocytogenes , S. agalactiae and VZV (100%), and lower for Escherichia coli , enterovirus and herpes simplex virus 2 (50–83.3%). NPA of FAME-p for human herpes virus 6 was difficult to interpret. Eighty-four cases received diagnosis of CNS-infection despite negative FAME-p. The four most common non-infectious etiologies were primary headache disorders, cranial nerve palsies, neuroinflammatory disorders and seizure. Although FAME-p shows good performance in diagnosis of CNS infections, result of FAME-p should be interpreted carefully. Considering infectious diseases not covered by FAME-p as well as non-infectious differential diagnoses is important in this context.