Combining viral genetic and animal mobility network data to unravel peste des petits ruminants transmission dynamics in West Africa

• Published in: PLoS pathogens Vol. 17; no. 3; p. e1009397
• Main Authors: Bataille, Arnaud, Salami, Habib, Seck, Ismaila, Lo, Modou Moustapha, Ba, Aminata, Diop, Mariame, Sall, Baba, Faye, Coumba, Lo, Mbargou, Kaba, Lanceï, Sidime, Youssouf, Keyra, Mohamed, Diallo, Alpha Oumar Sily, Niang, Mamadou, Sidibe, Cheick Abou Kounta, Sery, Amadou, Dakouo, Martin, El Mamy, Ahmed Bezeid, El Arbi, Ahmed Salem, Barry, Yahya, Isselmou, Ekaterina, Habiboullah, Habiboullah, Lella, Abdellahi Salem, Doumbia, Baba, Gueya, Mohamed Baba, Coste, Caroline, Squarzoni Diaw, Cécile, Kwiatek, Olivier, Libeau, Geneviève, Apolloni, Andrea
• Format: Journal Article
• Language: English
• Published: United States Public Library of Science 18.03.2021; Public Library of Science (PLoS)
• Subjects: Agricultural production; Agricultural sciences; Analysis; Animal production studies; Animals; Bayesian analysis; Biology and Life Sciences; Bluetongue; Clustering; Computer and Information Sciences; Conditional probability; Contagious caprine pleuropneumonia; Disease; Distribution; Gene sequencing; Genetic aspects; Genetic diversity; Genetic research; H gene; Life Sciences; Livestock; People and Places; Peste des petits ruminants; Phylogenetics; Phylogeny; Pleuropneumonia; Rinderpest; Shades; Signs and symptoms; Statistical inference; Surveillance; Viral genetics; Virus research; Viruses; Africa; Middle East; Mauritania; Mali; Asia; Senegal; West Africa
• ISSN: 1553-7374; 1553-7366; 1553-7374
• DOI: 10.1371/journal.ppat.1009397

Peste des petits ruminants (PPR) is a deadly viral disease that mainly affects small domestic ruminants. This disease threaten global food security and rural economy but its control is complicated notably because of extensive, poorly monitored animal movements in infected regions. Here we combined the largest PPR virus genetic and animal mobility network data ever collected in a single region to improve our understanding of PPR endemic transmission dynamics in West African countries. Phylogenetic analyses identified the presence of multiple PPRV genetic clades that may be considered as part of different transmission networks evolving in parallel in West Africa. A strong correlation was found between virus genetic distance and network-related distances. Viruses sampled within the same mobility communities are significantly more likely to belong to the same genetic clade. These results provide evidence for the importance of animal mobility in PPR transmission in the region. Some nodes of the network were associated with PPRV sequences belonging to different clades, representing potential "hotspots" for PPR circulation. Our results suggest that combining genetic and mobility network data could help identifying sites that are key for virus entrance and spread in specific areas. Such information could enhance our capacity to develop locally adapted control and surveillance strategies, using among other risk factors, information on animal mobility.