Phylogeny, character evolution and spatiotemporal diversification of the species-rich and world-wide distributed tribe Rubieae (Rubiaceae)

• Published in: PloS one Vol. 13; no. 12; p. e0207615
• Main Authors: Ehrendorfer, Friedrich, Barfuss, Michael H J, Manen, Jean-Francois, Schneeweiss, Gerald M
• Format: Journal Article
• Language: English
• Published: United States Public Library of Science 05.12.2018; Public Library of Science (PLoS)
• Subjects: Asperula; Bayes Theorem; Biodiversity; Biogeography; Biological Evolution; Biology and Life Sciences; Computer and Information Sciences; Deoxyribonucleic acid; Distribution; DNA; DNA, Plant - genetics; Earth Sciences; Ecology and Environmental Sciences; Evolution; Evolution (Biology); Evolution, Molecular; Flowers; Fruits; Galium; Galium - genetics; Genera; Genetic aspects; Genetic Speciation; Genome, Plastid - genetics; Hypotheses; Land bridges; Leaves; Miocene; Morphology; Mutation Rate; Phylogenetics; Phylogeny; Phylogeography - methods; Plant evolution; Plant reproduction; Plastids - genetics; Research and Analysis Methods; Ribosomal DNA; Rubiaceae; Rubiaceae - genetics; Sampling; Sequence Analysis, DNA - methods; Spacer; Species; Species diversity; Taxonomy; Northern Hemisphere; Austria; Missouri
• ISSN: 1932-6203; 1932-6203
• DOI: 10.1371/journal.pone.0207615

The Rubiaceae tribe Rubieae has a world-wide distribution with up to 1,000 species. These collectively exhibit an enormous ecological and morphological diversity, making Rubieae an excellent group for macro- and microevolutionary studies. Previous molecular phylogenetic analyses used only a limited sampling within the tribe or missed lineages crucial for understanding character evolution in this group. Here, we analyze sequences from two plastid spacer regions as well as morphological and biogeographic data from an extensive and evenly distributed sampling to establish a sound phylogenetic framework. This framework serves as a basis for our investigation of the evolution of important morphological characters and the biogeographic history of the Rubieae. The tribe includes three major clades, the Kelloggiinae Clade (Kelloggia), the Rubiinae Clade (Didymaea, Rubia) and the most species-rich Galiinae Clade (Asperula, Callipeltis, Crucianella, Cruciata, Galium, Mericarpaea, Phuopsis, Sherardia, Valantia). Within the Galiinae Clade, the largest genera Galium and Asperula are para- and polyphyletic, respectively. Smaller clades, however, usually correspond to currently recognized taxa (small genera or sections within genera), which may be used as starting points for a refined classification in this clade. Life-form (perennial versus annual), flower shape (long versus short corolla tube) and fruit characters (dry versus fleshy, with or without uncinate hairs) are highly homoplasious and have changed multiple times independently. Inference on the evolution of leaf whorls, a characteristic feature of the tribe, is sensitive to model choice. Multi-parted leaf whorls appear to have originated from opposite leaves with two small interpetiolar stipules that are subsequently enlarged and increased in number. Early diversification of Rubieae probably started during the Miocene in western Eurasia. Disjunctions between the Old and the New World possibly are due to connections via a North Atlantic land bridge. Diversification of the Galiineae Clade started later in the Miocene, probably in the Mediterranean, from where lineages reached, often multiple times, Africa, eastern Asia and further on the Americas and Australia.