Engineered ACE2 receptor therapy overcomes mutational escape of SARS-CoV-2

• Published in: Nature communications Vol. 12; no. 1; pp. 3802 - 13
• Main Authors: Higuchi, Yusuke, Suzuki, Tatsuya, Arimori, Takao, Ikemura, Nariko, Mihara, Emiko, Kirita, Yuhei, Ohgitani, Eriko, Mazda, Osam, Motooka, Daisuke, Nakamura, Shota, Sakai, Yusuke, Itoh, Yumi, Sugihara, Fuminori, Matsuura, Yoshiharu, Matoba, Satoaki, Okamoto, Toru, Takagi, Junichi, Hoshino, Atsushi
• Format: Journal Article
• Language: English
• Published: London Nature Publishing Group UK 21.06.2021; Nature Publishing Group; Nature Portfolio
• Subjects: 42/70; 49/31; 631/154/51/1568; 631/326/596/4130; 82/1; 82/103; 82/47; 82/80; 82/83; ACE2; Affinity; Angiotensin-converting enzyme 2; Angiotensin-Converting Enzyme 2 - genetics; Angiotensin-Converting Enzyme 2 - metabolism; Angiotensin-Converting Enzyme 2 - pharmacology; Animals; Binding; Cells, Cultured; Conformation; COVID-19; COVID-19 - metabolism; COVID-19 - virology; COVID-19 Drug Treatment; Cricetinae; Crystallography, X-Ray; Disease Models, Animal; Hamsters; Humanities and Social Sciences; Humans; Hydrogen bonding; Hydrophobicity; Male; Molecular Dynamics Simulation; multidisciplinary; Mutagenesis; Mutation; Pandemics; Protein Binding; Protein Engineering - methods; Random mutagenesis; Receptors; SARS-CoV-2 - drug effects; SARS-CoV-2 - isolation & purification; SARS-CoV-2 - metabolism; Science; Science (multidisciplinary); Severe acute respiratory syndrome coronavirus 2; Spike Glycoprotein, Coronavirus - metabolism; Structural stability; Therapeutic applications; Viral diseases; Viruses
• ISSN: 2041-1723; 2041-1723
• DOI: 10.1038/s41467-021-24013-y

SARS-CoV-2 has mutated during the global pandemic leading to viral adaptation to medications and vaccinations. Here we describe an engineered human virus receptor, ACE2, by mutagenesis and screening for binding to the receptor binding domain (RBD). Three cycles of random mutagenesis and cell sorting achieved sub-nanomolar affinity to RBD. Our structural data show that the enhanced affinity comes from better hydrophobic packing and hydrogen-bonding geometry at the interface. Additional disulfide mutations caused the fixing of a closed ACE2 conformation to avoid off-target effects of protease activity, and also improved structural stability. Our engineered ACE2 neutralized SARS-CoV-2 at a 100-fold lower concentration than wild type; we also report that no escape mutants emerged in the co-incubation after 15 passages. Therapeutic administration of engineered ACE2 protected hamsters from SARS-CoV-2 infection, decreased lung virus titers and pathology. Our results provide evidence of a therapeutic potential of engineered ACE2. Hoshino et al., engineer a human virus receptor, hACE2, and demonstrate its potential for overcoming SARS-CoV-2 mutations that otherwise hinder therapeutic interventions. Overall, the data provide insights in to the therapeutic potential of engineered receptors.