Sex differences in the polygenic architecture of hearing problems in adults

• Published in: Genome medicine Vol. 15; no. 1; pp. 36 - 18
• Main Authors: De Angelis, Flavio, Zeleznik, Oana A., Wendt, Frank R., Pathak, Gita A., Tylee, Daniel S., De Lillo, Antonella, Koller, Dora, Cabrera-Mendoza, Brenda, Clifford, Royce E., Maihofer, Adam X., Nievergelt, Caroline M., Curhan, Gary C., Curhan, Sharon G., Polimanti, Renato
• Format: Journal Article
• Language: English
• Published: England BioMed Central Ltd 11.05.2023; BioMed Central; BMC
• Subjects: Adult; Adults; Analysis; Ancestry; Polygenic risk scores; Biobanks; Central nervous system; Comorbidity; Deafness; Drug development; Electronic health records; Environmental factors; Epidemiology; Estrogen; Estrogens; Female; Follow-Up Studies; Gender differences; Genetic aspects; Genetic Predisposition to Disease; Genome-wide association study; Genome-Wide Association Study - methods; Genomes; Genomics; Health aspects; Hearing; Hearing aids; Hearing loss; Hearing problems; Humans; Investigations; Male; Males; Medical personnel; Multifactorial Inheritance; Mutation; Noise pollution; Nurses; Older people; Pleiotropy; Polygenic inheritance; Population; Quality control; Questionnaires; Replication; Risk factors; Sample size; Self report; Sex Characteristics; Sex differences; Smoking; Tobacco smoking; Transcriptomic regulation; Transcriptomics; United Kingdom > UK; United States > US; Causal inference; Hearing problems; Pleiotropy; Transcriptomic regulation; Genome-wide association study; Ancestry; Polygenic risk scores; Sex differences; Genome-wide gene-by-environment interaction
• ISSN: 1756-994X; 1756-994X
• DOI: 10.1186/s13073-023-01186-3

Hearing problems (HP) in adults are common and are associated with several comorbid conditions. Its prevalence increases with age, reflecting the cumulative effect of environmental factors and genetic predisposition. Although several risk loci have been already identified, HP biology and epidemiology are still insufficiently investigated by large-scale genetic studies. Leveraging the UK Biobank, the Nurses' Health Studies (I and II), the Health Professionals Follow-up Study, and the Million Veteran Program, we conducted a comprehensive genome-wide investigation of HP in 748,668 adult participants (discovery N = 501,825; replication N = 226,043; cross-ancestry replication N = 20,800). We leveraged the GWAS findings to characterize HP polygenic architecture, exploring sex differences, polygenic risk across ancestries, tissue-specific transcriptomic regulation, cause-effect relationships with genetically correlated traits, and gene interactions with HP environmental risk factors. We identified 54 risk loci and demonstrated that HP polygenic risk is shared across ancestry groups. Our transcriptomic regulation analysis highlighted the potential role of the central nervous system in HP pathogenesis. The sex-stratified analyses showed several additional associations related to peripheral hormonally regulated tissues reflecting a potential role of estrogen in hearing function. This evidence was supported by the multivariate interaction analysis that showed how genes involved in brain development interact with sex, noise pollution, and tobacco smoking in relation to their HP associations. Additionally, the genetically informed causal inference analysis showed that HP is linked to many physical and mental health outcomes. The results provide many novel insights into the biology and epidemiology of HP in adults. Our sex-specific analyses and transcriptomic associations highlighted molecular pathways that may be targeted for drug development or repurposing. Additionally, the potential causal relationships identified may support novel preventive screening programs to identify individuals at risk.