Comparative study on chloroplast genomes of three Hansenia forbesii varieties (Apiaceae)

To find the gene hypervariable regions of three varieties of Hansenia forbesii H. Boissieu and determine their phylogenetic relationship, the chloroplast (cp) genome of these three varieties were firstly sequencing by the Illumina hiseq platform. In this study, we assembled the complete cp genome se...

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Published inPloS one Vol. 18; no. 6; p. e0286587
Main Authors Zhu, Chenghao, Jiang, Yuan, Bai, Yu, Dong, Shengjian, Zhirong, Sun
Format Journal Article
LanguageEnglish
Published United States Public Library of Science 01.06.2023
Public Library of Science (PLoS)
Subjects
Analysis
Apiaceae
Biology and Life Sciences
Biotechnology
Chinese medicine
Chloroplasts
Comparative studies
Computer and Information Sciences
Control
Deoxyribonucleic acid
DNA
Endangered species
Engineering and Technology
Gene sequencing
Genes
Genetic aspects
Genetic engineering
Genetic testing
Genomes
Genomics
Germplasm
Identification and classification
Phylogenetics
Phylogeny
Protection and preservation
Research and Analysis Methods
China
Gansu China
United States > US
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Summary:To find the gene hypervariable regions of three varieties of Hansenia forbesii H. Boissieu and determine their phylogenetic relationship, the chloroplast (cp) genome of these three varieties were firstly sequencing by the Illumina hiseq platform. In this study, we assembled the complete cp genome sequences of Hansenia forbesii LQ (156,954 bp), H. forbesii QX (157,181 bp), H. forbesii WQ (156,975 bp). They all contained 84 protein-coding genes, 37 tRNAs, and 8 rRNAs. The hypervariable regions between three cp genomes were atpF-atpH, petD, and rps15-ycf1. Phylogenetic analysis showed that H. forbesii LQ and H. forbesii WQ were closely related, followed by H. forbesii QX. This study showed that the three varieties of H. forbesii could be identified by the complete cp genome and specific DNA barcode (trnC-GCA-petN) and provided a new idea for germplasm identification of similar cultivated varieties.
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Competing Interests: We declare that there is no conflict of interest regarding the publication of this article.
ISSN:1932-6203
1932-6203
DOI:10.1371/journal.pone.0286587