Multiple nucleophilic elbows leading to multiple active sites in a single module esterase from Sorangium cellulosum

• Published in: Journal of structural biology Vol. 190; no. 3; pp. 314 - 327
• Main Authors: Udatha, D.B.R.K. Gupta, Madsen, Karina Marie, Panagiotou, Gianni, Olsson, Lisbeth
• Format: Journal Article
• Language: English
• Published: United States Elsevier Inc 01.06.2015; Academic Press
• Subjects: Active sites; Catalytic Domain - genetics; Consensus Sequence - genetics; Escherichia coli - genetics; Esterase; Esterases - genetics; Gram-Negative Bacteria - genetics; Kinetics; Models, Molecular; Mutagenesis, Site-Directed - methods; Nucleophilic elbow; Protein modeling; Protein modeling; Esterase; Active sites; Nucleophilic elbow
• ISSN: 1047-8477; 1095-8657; 1095-8657
• DOI: 10.1016/j.jsb.2015.04.009

The catalytic residues in carbohydrate esterase enzyme families constitute a highly conserved triad: serine, histidine and aspartic acid. This catalytic triad is generally located in a very sharp turn of the protein backbone structure, called the nucleophilic elbow and identified by the consensus sequence GXSXG. An esterase from Sorangium cellulosum Soce56 that contains five nucleophilic elbows was cloned and expressed in Escherichia coli and the function of each nucleophilic elbowed site was characterized. In order to elucidate the function of each nucleophilic elbow, site directed mutagenesis was used to generate variants with deactivated nucleophilic elbows and the functional promiscuity was analyzed. In silico analysis together with enzymological characterization interestingly showed that each nucleophilic elbow formed a local active site with varied substrate specificities and affinities. To our knowledge, this is the first report presenting the role of multiple nucleophilic elbows in the catalytic promiscuity of an esterase. Further structural analysis at protein unit level indicates the new evolutionary trajectories in emerging promiscuous esterases.