An open access resource for functional brain connectivity from fully awake marmosets

• Published in: NeuroImage (Orlando, Fla.) Vol. 252; p. 119030
• Main Authors: Schaeffer, David J., Klassen, L Martyn, Hori, Yuki, Tian, Xiaoguang, Szczupak, Diego, Yen, Cecil Chern-Chyi, Cléry, Justine C., Gilbert, Kyle M., Gati, Joseph S., Menon, Ravi S., Liu, CiRong, Everling, Stefan, Silva, Afonso C.
• Format: Journal Article
• Language: English
• Published: United States Elsevier Inc 15.05.2022; Elsevier Limited; Elsevier
• Subjects: Access to Information; Animals; Brain - physiology; Brain architecture; Brain mapping; Brain research; Callithrix - physiology; Common marmoset; Functional connectivity; Functional magnetic resonance imaging; Functional morphology; Humans; Hypotheses; Information sharing; Magnetic Resonance Imaging - methods; Medical imaging; Mice; Neural networks; Non-human primate; Open-access data resource; Rats; Resting-state functional magnetic resonance imaging; Structure-function relationships; Substantia grisea; Wakefulness; Functional connectivity; Open-access data resource; Common marmoset; Resting-state functional magnetic resonance imaging; Non-human primate
• ISSN: 1053-8119; 1095-9572; 1095-9572
• DOI: 10.1016/j.neuroimage.2022.119030

The common marmoset (Callithrix jacchus) is quickly gaining traction as a premier neuroscientific model. However, considerable progress is still needed in understanding the functional and structural organization of the marmoset brain to rival that documented in longstanding preclinical model species, like mice, rats, and Old World primates. To accelerate such progress, we present the Marmoset Functional Brain Connectivity Resource (marmosetbrainconnectome.org), currently consisting of over 70 h of resting-state fMRI (RS-fMRI) data acquired at 500 µm isotropic resolution from 31 fully awake marmosets in a common stereotactic space. Three-dimensional functional connectivity (FC) maps for every cortical and subcortical gray matter voxel are stored online. Users can instantaneously view, manipulate, and download any whole-brain functional connectivity (FC) topology (at the subject- or group-level) along with the raw datasets and preprocessing code. Importantly, researchers can use this resource to test hypotheses about FC directly – with no additional analyses required – yielding whole-brain correlations for any gray matter voxel on demand. We demonstrate the resource's utility for presurgical planning and comparison with tracer-based neuronal connectivity as proof of concept. Complementing existing structural connectivity resources for the marmoset brain, the Marmoset Functional Brain Connectivity Resource affords users the distinct advantage of exploring the connectivity of any voxel in the marmoset brain, not limited to injection sites nor constrained by regional atlases. With the entire raw database (RS-fMRI and structural images) and preprocessing code openly available for download and use, we expect this resource to be broadly valuable to test novel hypotheses about the functional organization of the marmoset brain.