A standardized framework for representation of ancestry data in genomics studies, with application to the NHGRI-EBI GWAS Catalog
The accurate description of ancestry is essential to interpret, access, and integrate human genomics data, and to ensure that these benefit individuals from all ancestral backgrounds. However, there are no established guidelines for the representation of ancestry information. Here we describe a fram...
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Published in | Genome Biology Vol. 19; no. 1; p. 21 |
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Main Authors | , , , , , , , , , , , , , , , , , |
Format | Journal Article |
Language | English |
Published |
England
BioMed Central
15.02.2018
BMC |
Subjects | |
Online Access | Get full text |
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Summary: | The accurate description of ancestry is essential to interpret, access, and integrate human genomics data, and to ensure that these benefit individuals from all ancestral backgrounds. However, there are no established guidelines for the representation of ancestry information. Here we describe a framework for the accurate and standardized description of sample ancestry, and validate it by application to the NHGRI-EBI GWAS Catalog. We confirm known biases and gaps in diversity, and find that African and Hispanic or Latin American ancestry populations contribute a disproportionately high number of associations. It is our hope that widespread adoption of this framework will lead to improved analysis, interpretation, and integration of human genomics data. |
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Bibliography: | SourceType-Other Sources-1 ObjectType-Article-1 content type line 63 ObjectType-Correspondence-2 |
ISSN: | 1474-760X 1474-7596 1474-760X |
DOI: | 10.1186/s13059-018-1396-2 |