Identification and validation of aging-related genes in atrial fibrillation

• Published in: PloS one Vol. 18; no. 11; p. e0294282
• Main Authors: Zhou, Yong, Sun, Chao, Ma, Yingxu, Huang, Yunyin, Wu, Keke, Huang, Shengyuan, Lin, Qiuzhen, Zhu, Jiayi, Ning, Zuodong, Liu, Ningyuan, Tu, Tao, Liu, Qiming
• Format: Journal Article
• Language: English
• Published: San Francisco Public Library of Science 13.11.2023; Public Library of Science (PLoS)
• Subjects: 1-Phosphatidylinositol 3-kinase; Aging; AKT protein; Algorithms; Arrhythmia; Atrial fibrillation; B cells; Bioinformatics; Biology and Life Sciences; Biomarkers; Cardiac arrhythmia; Computer and Information Sciences; Correlation analysis; Datasets; Diagnostic systems; Feature selection; Fibrillation; Forkhead protein; Gene expression; Gene set enrichment analysis; Genes; Genomics; Heart; Immune system; Infiltration; Machine learning; Medicine and Health Sciences; Pathogenesis; Performance evaluation; Physical Sciences; Proteins; Research and Analysis Methods; RNA; Senescence; Signal transduction; Superoxide dismutase; Support vector machines; Transcriptomes; Tumor necrosis factor-TNF; Visualization; China; Taiwan
• ISSN: 1932-6203; 1932-6203
• DOI: 10.1371/journal.pone.0294282

Atrial fibrillation (AF) is the most common sustained cardiac arrhythmia in the clinic. Aging plays an essential role in the occurrence and development of AF. Herein, we aimed to identify the aging-related genes associated with AF using bioinformatics analysis. Transcriptome profiles of AF were obtained from the GEO database. Differential expression analysis was performed to identify AF-specific aging-related genes. GO and KEGG enrichment analyses were performed. Subsequently, the LASSO, SVM-RFE, and MCC algorithms were applied to screen aging-related genes. The mRNA expression of the screened genes was validated in the left atrial samples of aged rapid atrial pacing-induced AF canine models and their counterparts. The ROC curves of them were drawn to evaluate their diagnostic potential. Moreover, CIBERSORT was used to estimate immune infiltration. A correlation analysis between screened aging-related genes and infiltrating immune cells was performed. A total of 24 aging-related genes were identified, which were found to be mainly involved in the FoxO signaling pathway, PI3K-Akt signaling pathway, longevity regulating pathway, and peroxisome according to functional enrichment analysis. LASSO, SVM-RFE, and MCC algorithms identified three genes (HSPA9, SOD2, TXN). Furthermore, the expression levels of HSPA9 and SOD2 were validated in aged rapid atrial pacing-induced AF canine models. HSPA9 and SOD2 could be potential diagnostic biomarkers for AF, as evidenced by the ROC curves. Immune infiltration and correlation analysis revealed that HSPA9 and SOD2 were related to immune cell infiltrates. Collectively, these findings provide novel insights into the potential aging-related genes associated with AF. HSPA9 and SOD2 may play a significant role in the occurrence and development of AF.