Xenbase: a Xenopus biology and genomics resource

• Published in: Nucleic acids research Vol. 36; no. suppl-1; pp. D761 - D767
• Main Authors: Bowes, Jeff B, Snyder, Kevin A, Segerdell, Erik, Gibb, Ross, Jarabek, Chris, Noumen, Etienne, Pollet, Nicolas, Vize, Peter D
• Format: Journal Article
• Language: English
• Published: England Oxford University Press 01.01.2008; Oxford Publishing Limited (England)
• Subjects: Amphibians; Animals; Anura; Databases, Genetic; Freshwater; Gene Expression; Genes; Genomics; Internet; PubMed; Terminology as Topic; User-Computer Interface; Xenopus - anatomy & histology; Xenopus - genetics; Xenopus laevis; Xenopus laevis - genetics
• ISSN: 0305-1048; 1362-4962; 1362-4962
• DOI: 10.1093/nar/gkm826

Xenbase (www.xenbase.org) is a model organism database integrating a diverse array of biological and genomic data on the frogs, Xenopus laevis and Xenopus (Silurana) tropicalis. Data is collected from other databases, high-throughput screens and the scientific literature and integrated into a number of database modules covering subjects such as community, literature, gene and genomic analysis. Gene pages are automatically assembled from data piped from the Entrez Gene, Gurdon Institute, JGI, Metazome, MGI, OMIM, PubMed, Unigene, Zfin, commercial suppliers and others. These data are then supplemented with in-house annotation. Xenbase has implemented the Gbrowse genome browser and also provides a BLAST service that allows users to specifically search either laevis or tropicalis DNA or protein targets. A table of Xenopus gene synonyms has been implemented and allows the genome, genes, publications and high-throughput gene expression data to be seamlessly integrated with other Xenopus data and to external database resources, making the wealth of developmental and functional data from the frog available to the broader research community.