A Four-Biomarker Blood Signature Discriminates Systemic Inflammation Due to Viral Infection Versus Other Etiologies

• Published in: Scientific reports Vol. 7; no. 1; pp. 2914 - 17
• Main Authors: Sampson, D. L., Fox, B. A., Yager, T. D., Bhide, S., Cermelli, S., McHugh, L. C., Seldon, T. A., Brandon, R. A., Sullivan, E., Zimmerman, J. J., Noursadeghi, M., Brandon, R. B.
• Format: Journal Article
• Language: English
• Published: London Nature Publishing Group UK 06.06.2017; Nature Publishing Group; Nature Portfolio
• Subjects: 38/39; 45/91; 692/53/2421; 692/699/255/2514; Adolescent; Biomarkers; Blood; Case-Control Studies; Child; Child, Preschool; Databases, Factual; Dengue fever; Female; Gene expression; Gene Expression Profiling; Host-Pathogen Interactions - genetics; Host-Pathogen Interactions - immunology; Humanities and Social Sciences; Humans; Immune system; Infant; Infections; Inflammation - blood; Inflammation - diagnosis; Inflammation - etiology; Influenza; Innate immunity; Interferon; Interleukin 1; Interleukin 16; Male; multidisciplinary; Reproducibility of Results; Respiratory syncytial virus; Science; Science (multidisciplinary); Statistical analysis; Transcription; Transcriptome; Vector-borne diseases; Viral infections; Virus Diseases - blood; Virus Diseases - diagnosis; Virus Diseases - virology
• ISSN: 2045-2322; 2045-2322
• DOI: 10.1038/s41598-017-02325-8

The innate immune system of humans and other mammals responds to pathogen-associated molecular patterns (PAMPs) that are conserved across broad classes of infectious agents such as bacteria and viruses. We hypothesized that a blood-based transcriptional signature could be discovered indicating a host systemic response to viral infection. Previous work identified host transcriptional signatures to individual viruses including influenza, respiratory syncytial virus and dengue, but the generality of these signatures across all viral infection types has not been established. Based on 44 publicly available datasets and two clinical studies of our own design, we discovered and validated a four-gene expression signature in whole blood, indicative of a general host systemic response to many types of viral infection. The signature’s genes are: Interferon Stimulated Gene 15 ( ISG15 ), Interleukin 16 ( IL16 ), 2′,5′-Oligoadenylate Synthetase Like ( OASL ), and Adhesion G Protein Coupled Receptor E5 ( ADGRE5 ). In each of 13 validation datasets encompassing human, macaque, chimpanzee, pig, mouse, rat and all seven Baltimore virus classification groups, the signature provides statistically significant (p < 0.05) discrimination between viral and non-viral conditions. The signature may have clinical utility for differentiating host systemic inflammation (SI) due to viral versus bacterial or non-infectious causes.