A genome-wide association study identifies new susceptibility loci for non-cardia gastric cancer at 3q13.31 and 5p13.1

Hongbing Shen, Dongxin Lin, Yongyong Shi and colleagues identify two new susceptibility loci for non-cardia gastric cancer. They also confirm three previously reported risk loci for this gastric cancer subtype. Gastric cancer, including the cardia and non-cardia types, is the second leading cause of...

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Published inNature genetics Vol. 43; no. 12; pp. 1215 - 1218
Main Authors Shi, Yongyong, Hu, Zhibin, Wu, Chen, Dai, Juncheng, Li, Huizhang, Dong, Jing, Wang, Meilin, Miao, Xiaoping, Zhou, Yifeng, Lu, Feng, Zhang, Hanze, Hu, Lingmin, Jiang, Yue, Li, Zhiqiang, Chu, Minjie, Ma, Hongxia, Chen, Jiaping, Jin, Guangfu, Tan, Wen, Wu, Tangchun, Zhang, Zhengdong, Lin, Dongxin, Shen, Hongbing
Format Journal Article
LanguageEnglish
Published New York Nature Publishing Group US 01.12.2011
Nature Publishing Group
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Abstract Hongbing Shen, Dongxin Lin, Yongyong Shi and colleagues identify two new susceptibility loci for non-cardia gastric cancer. They also confirm three previously reported risk loci for this gastric cancer subtype. Gastric cancer, including the cardia and non-cardia types, is the second leading cause of cancer-related deaths worldwide. To identify genetic risk variants for non-cardia gastric cancer, we performed a genome-wide association study in 3,279 individuals (1,006 with non-cardia gastric cancer and 2,273 controls) of Chinese descent. We replicated significant associations in an additional 6,897 subjects (3,288 with non-cardia gastric cancer and 3,609 controls). We identified two new susceptibility loci for non-cardia gastric cancer at 5p13.1 (rs13361707 in the region including PTGER4 and PRKAA1 ; odds ratio (OR) = 1.41; P = 7.6 × 10 −29 ) and 3q13.31 (rs9841504 in ZBTB20 ; OR = 0.76; P = 1.7 × 10 −9 ). Imputation analyses also confirmed previously reported associations of rs2294008 and rs2976392 on 8q24, rs4072037 on 1q22 and rs13042395 on 20p13 with non-cardia gastric cancer susceptibility in the Han Chinese population.
AbstractList Gastric cancer, including the cardia and non-cardia types, is the second leading cause of cancer-related deaths worldwide. To identify genetic risk variants for non-cardia gastric cancer, we performed a genome-wide association study in 3,279 individuals (1,006 with non-cardia gastric cancer and 2,273 controls) of Chinese descent. We replicated significant associations in an additional 6,897 subjects (3,288 with non-cardia gastric cancer and 3,609 controls). We identified two new susceptibility loci for non-cardia gastric cancer at 5p13.1 (rs13361707 in the region including PTGER4 and PRKAA1; odds ratio (OR) = 1.41; P = 7.6 × 10(-29)) and 3q13.31 (rs9841504 in ZBTB20; OR = 0.76; P = 1.7 × 10(-9)). Imputation analyses also confirmed previously reported associations of rs2294008 and rs2976392 on 8q24, rs4072037 on 1q22 and rs13042395 on 20p13 with non-cardia gastric cancer susceptibility in the Han Chinese population.Gastric cancer, including the cardia and non-cardia types, is the second leading cause of cancer-related deaths worldwide. To identify genetic risk variants for non-cardia gastric cancer, we performed a genome-wide association study in 3,279 individuals (1,006 with non-cardia gastric cancer and 2,273 controls) of Chinese descent. We replicated significant associations in an additional 6,897 subjects (3,288 with non-cardia gastric cancer and 3,609 controls). We identified two new susceptibility loci for non-cardia gastric cancer at 5p13.1 (rs13361707 in the region including PTGER4 and PRKAA1; odds ratio (OR) = 1.41; P = 7.6 × 10(-29)) and 3q13.31 (rs9841504 in ZBTB20; OR = 0.76; P = 1.7 × 10(-9)). Imputation analyses also confirmed previously reported associations of rs2294008 and rs2976392 on 8q24, rs4072037 on 1q22 and rs13042395 on 20p13 with non-cardia gastric cancer susceptibility in the Han Chinese population.
Gastric cancer, including the cardia and non-cardia types, is the second leading cause of cancer-related deaths worldwide. To identify genetic risk variants for non-cardia gastric cancer, we performed a genome-wide association study in 3,279 individuals (1,006 with non-cardia gastric cancer and 2,273 controls) of Chinese descent. We replicated significant associations in an additional 6,897 subjects (3,288 with non-cardia gastric cancer and 3,609 controls). We identified two new susceptibility loci for non-cardia gastric cancer at 5p13.1 (rs13361707 in the region including PTGER4 and PRKAA1; odds ratio (OR) = 1.41; P = 7.6 x 10 super(-29)) and 3q13.31 (rs9841504 in ZBTB20; OR = 0.76; P = 1.7 x 10 super(-9)). Imputation analyses also confirmed previously reported associations of rs2294008 and rs2976392 on 8q24, rs4072037 on 1q22 and rs13042395 on 20p13 with non-cardia gastric cancer susceptibility in the Han Chinese population.
Hongbing Shen, Dongxin Lin, Yongyong Shi and colleagues identify two new susceptibility loci for non-cardia gastric cancer. They also confirm three previously reported risk loci for this gastric cancer subtype. Gastric cancer, including the cardia and non-cardia types, is the second leading cause of cancer-related deaths worldwide. To identify genetic risk variants for non-cardia gastric cancer, we performed a genome-wide association study in 3,279 individuals (1,006 with non-cardia gastric cancer and 2,273 controls) of Chinese descent. We replicated significant associations in an additional 6,897 subjects (3,288 with non-cardia gastric cancer and 3,609 controls). We identified two new susceptibility loci for non-cardia gastric cancer at 5p13.1 (rs13361707 in the region including PTGER4 and PRKAA1 ; odds ratio (OR) = 1.41; P = 7.6 × 10 −29 ) and 3q13.31 (rs9841504 in ZBTB20 ; OR = 0.76; P = 1.7 × 10 −9 ). Imputation analyses also confirmed previously reported associations of rs2294008 and rs2976392 on 8q24, rs4072037 on 1q22 and rs13042395 on 20p13 with non-cardia gastric cancer susceptibility in the Han Chinese population.
Gastric cancer, including the cardia and non-cardia types, is the second leading cause of cancer-related deaths worldwide. To identify genetic risk variants for non-cardia gastric cancer, we performed a genome-wide association study in 3,279 individuals (1,006 with non-cardia gastric cancer and 2,273 controls) of Chinese descent. We replicated significant associations in an additional 6,897 subjects (3,288 with non-cardia gastric cancer and 3,609 controls). We identified two new susceptibility loci for non-cardia gastric cancer at 5p13.1 (rs13361707 in the region including PTGER4 and PRKAA1; odds ratio (OR) = 1.41; P = 7.6 × 10(-29)) and 3q13.31 (rs9841504 in ZBTB20; OR = 0.76; P = 1.7 × 10(-9)). Imputation analyses also confirmed previously reported associations of rs2294008 and rs2976392 on 8q24, rs4072037 on 1q22 and rs13042395 on 20p13 with non-cardia gastric cancer susceptibility in the Han Chinese population.
Gastric cancer, including the cardia and non-cardia types, is the second leading cause of cancer-related deaths worldwide. To identify genetic risk variants for non-cardia gastric cancer, we performed a genome-wide association study in 3,279 individuals (1,006 with non-cardia gastric cancer and 2,273 controls) of Chinese descent. We replicated significant associations in an additional 6,897 subjects (3,288 with non-cardia gastric cancer and 3,609 controls). We identified two new susceptibility loci for non-cardia gastric cancer at 5p13.1 (rs13361707 in the region including PTGER4 and PRKAA1; odds ratio (OR) = 1.41; P = 7.6 × 10^sup -29^) and 3q13.31 (rs9841504 in ZBTB20; OR = 0.76; P = 1.7 × 10^sup -9^). Imputation analyses also confirmed previously reported associations of rs2294008 and rs2976392 on 8q24, rs4072037 on 1q22 and rs13042395 on 20p13 with non-cardia gastric cancer susceptibility in the Han Chinese population. [PUBLICATION ABSTRACT]
Gastric cancer, including the cardia and non-cardia types, is the second leading cause of cancer-related deaths worldwide. To identify genetic risk variants for non-cardia gastric cancer, we performed a genome-wide association study in 3,279 individuals (1,006 with non-cardia gastric cancer and 2,273 controls) of Chinese descent. We replicated significant associations in an additional 6,897 subjects (3,288 with non-cardia gastric cancer and 3,609 controls). We identified two new susceptibility loci for non-cardia gastric cancer at 5p13.1 (rsl 3361707 in the region including PTGER4 and PRKAA1; odds ratio (OR) = 1.41; P = 7.6 x [10.sup.-29]) and 3q13.31 (rs9841504 in ZBTB20; OR = 0.76; P = 1.7 x [10.sup.-9]). Imputation analyses also confirmed previously reported associations of rs2294008 and rs2976392 on 8q24, rs4072037 on 1q22 and rs13042395 on 20p13 with non-cardia gastric cancer susceptibility in the Han Chinese population.
Audience Academic
Author Zhang, Hanze
Hu, Zhibin
Lin, Dongxin
Ma, Hongxia
Wang, Meilin
Miao, Xiaoping
Chu, Minjie
Hu, Lingmin
Shi, Yongyong
Jiang, Yue
Shen, Hongbing
Jin, Guangfu
Zhang, Zhengdong
Wu, Tangchun
Wu, Chen
Dai, Juncheng
Li, Zhiqiang
Li, Huizhang
Tan, Wen
Dong, Jing
Zhou, Yifeng
Lu, Feng
Chen, Jiaping
Author_xml – sequence: 1
  givenname: Yongyong
  surname: Shi
  fullname: Shi, Yongyong
  email: shiyongyong@gmail.com
  organization: Bio-X Institutes, Ministry of Education Key Laboratory for the Genetics of Developmental and Neuropsychiatric Disorders, Shanghai Jiao Tong University
– sequence: 2
  givenname: Zhibin
  surname: Hu
  fullname: Hu, Zhibin
  organization: Department of Epidemiology and Biostatistics, Ministry of Education Key Laboratory for Modern Toxicology, School of Public Health, Nanjing Medical University, Section of Clinical Epidemiology, Jiangsu Key Laboratory of Cancer Biomarkers, Prevention and Treatment, Cancer Center, Nanjing Medical University, State Key Laboratory of Reproductive Medicine, Nanjing Medical University
– sequence: 3
  givenname: Chen
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– sequence: 4
  givenname: Juncheng
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  givenname: Huizhang
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  organization: Department of Epidemiology and Biostatistics, Ministry of Education Key Laboratory for Modern Toxicology, School of Public Health, Nanjing Medical University
– sequence: 6
  givenname: Jing
  surname: Dong
  fullname: Dong, Jing
  organization: Department of Epidemiology and Biostatistics, Ministry of Education Key Laboratory for Modern Toxicology, School of Public Health, Nanjing Medical University
– sequence: 7
  givenname: Meilin
  surname: Wang
  fullname: Wang, Meilin
  organization: Department of Occupational Medicine and Environmental Health, School of Public Health, Nanjing Medical University
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  givenname: Feng
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– sequence: 11
  givenname: Hanze
  surname: Zhang
  fullname: Zhang, Hanze
  organization: Department of Epidemiology and Biostatistics, Ministry of Education Key Laboratory for Modern Toxicology, School of Public Health, Nanjing Medical University
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  givenname: Jiaping
  surname: Chen
  fullname: Chen, Jiaping
  organization: Department of Epidemiology and Biostatistics, Ministry of Education Key Laboratory for Modern Toxicology, School of Public Health, Nanjing Medical University, Section of Clinical Epidemiology, Jiangsu Key Laboratory of Cancer Biomarkers, Prevention and Treatment, Cancer Center, Nanjing Medical University
– sequence: 18
  givenname: Guangfu
  surname: Jin
  fullname: Jin, Guangfu
  organization: Department of Epidemiology and Biostatistics, Ministry of Education Key Laboratory for Modern Toxicology, School of Public Health, Nanjing Medical University, Section of Clinical Epidemiology, Jiangsu Key Laboratory of Cancer Biomarkers, Prevention and Treatment, Cancer Center, Nanjing Medical University
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BackLink http://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=25285509$$DView record in Pascal Francis
https://www.ncbi.nlm.nih.gov/pubmed/22037551$$D View this record in MEDLINE/PubMed
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CODEN NGENEC
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Keywords Digestive diseases
Identification
Malignant tumor
Locus
Stomach cancer
Cancer
Gastric disease
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Snippet Hongbing Shen, Dongxin Lin, Yongyong Shi and colleagues identify two new susceptibility loci for non-cardia gastric cancer. They also confirm three previously...
Gastric cancer, including the cardia and non-cardia types, is the second leading cause of cancer-related deaths worldwide. To identify genetic risk variants...
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SubjectTerms 631/208/205/2138
631/208/727/2000
631/67/2324
692/699/67/1504/1829
Adult
Aged
Agriculture
AMP-Activated Protein Kinases - genetics
Animal Genetics and Genomics
Biological and medical sciences
Biomedical and Life Sciences
Biomedicine
Cancer
Cancer Research
Case-Control Studies
Chromosomes, Human, Pair 3 - genetics
Chromosomes, Human, Pair 5 - genetics
Confidence intervals
Development and progression
Disease susceptibility
Female
Fundamental and applied biological sciences. Psychology
Gastroenterology. Liver. Pancreas. Abdomen
Gene Function
Genetic aspects
Genetic Loci
Genetics of eukaryotes. Biological and molecular evolution
Genome-Wide Association Study
Genomes
Health care
Human Genetics
Humans
letter
Male
Medical sciences
Middle Aged
Nerve Tissue Proteins - genetics
Odds Ratio
Pathogenesis
Polymorphism, Single Nucleotide
Public health
R&D
Receptors, Prostaglandin E, EP4 Subtype - genetics
Research & development
Risk factors
Sample size
Single nucleotide polymorphisms
Stomach cancer
Stomach Neoplasms - genetics
Stomach. Duodenum. Small intestine. Colon. Rectum. Anus
Studies
Transcription Factors - genetics
Tumors
Title A genome-wide association study identifies new susceptibility loci for non-cardia gastric cancer at 3q13.31 and 5p13.1
URI https://link.springer.com/article/10.1038/ng.978
https://www.ncbi.nlm.nih.gov/pubmed/22037551
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https://www.proquest.com/docview/906559006
Volume 43
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