Types of vegetables shape composition, diversity, and co-occurrence networks of soil bacteria and fungi in karst areas of southwest China

• Published in: BMC microbiology Vol. 23; no. 1; p. 194
• Main Authors: Wei, Xiaoliao, Fu, Tianling, He, Guandi, Zhong, Zhuoyan, Yang, Mingfang, Lou, Fei, He, Tengbing
• Format: Journal Article
• Language: English
• Published: England BioMed Central Ltd 19.07.2023; BioMed Central; BMC
• Subjects: Acidic soils; Agricultural management; Analysis; Ascomycota; Bacteria; Bacteria - genetics; Basidiomycota; Biological diversity; China; Co-occurrence network; Composition; Cultivation; Ecosystems; Environmental aspects; Fruits; Fungi; Fungi - genetics; Genes; Genetic aspects; Growth; Harvest; Human impact; Humans; Kale; Karst; Keystone taxa; Leafy vegetable soil; Melon and fruit soil; Microorganism; Microorganisms; Next-generation sequencing; Nitrogen; Phosphorus; Potassium; Relative abundance; RNA; rRNA; Software; Soil; Soil bacteria; Soil Microbiology; Soil microorganisms; Soils; Taxonomy; Tomatoes; Variance analysis; Vegetables; China; Melon and fruit soil; Microorganism; Keystone taxa; Co-occurrence network; Leafy vegetable soil
• ISSN: 1471-2180; 1471-2180
• DOI: 10.1186/s12866-023-02929-3

Microorganisms are of significant importance in soil. Yet their association with specific vegetable types remains poorly comprehended. This study investigates the composition of bacterial and fungal communities in soil by employing high-throughput sequencing of 16 S rRNA genes and ITS rRNA genes while considering the cultivation of diverse vegetable varieties. The findings indicate that the presence of cultivated vegetables influenced the bacterial and fungal communities leading to discernible alterations when compared to uncultivated soil. In particular, the soil of leafy vegetables (such as cabbage and kale) exhibited higher bacterial α-diversity than melon and fruit vegetable (such as cucumber and tomato), while fungal α-diversity showed an inverse pattern. The prevailing bacterial phyla in both leafy vegetable and melon and fruit vegetable soils were Proteobacteria, Acidobacteriota, Actinobacteriota, and Chloroflexi. In leafy vegetable soil, dominant fungal phyla included Ascomycota, Olpidiomycota, Mortierellomycota, and Basidiomycota whereas in melon and fruit vegetable soil. Ascomycota, Mortierellomycota, Basidiomycota, and Rozellomycota held prominence. Notably, the relative abundance of Ascomycota was lower in leafy vegetable soil compared to melon and fruit vegetable soil. Moreover, leafy vegetable soil exhibited a more complex and stable co-occurrence network in comparison to melon and fruit vegetable soil. The findings enhance our understanding of how cultivated soil bacteria and fungi respond to human disturbance, thereby providing a valuable theoretical basis for soil health in degraded karst areas of southwest China.