Comparative transcriptome combined with metabolome analyses revealed key factors involved in nitric oxide (NO)-regulated cadmium stress adaptation in tall fescue

• Published in: BMC genomics Vol. 21; no. 1; pp. 601 - 13
• Main Authors: Zhu, Huihui, Ai, Honglian, Hu, Zhengrong, Du, Dongyun, Sun, Jie, Chen, Ke, Chen, Liang
• Format: Journal Article
• Language: English
• Published: England BioMed Central Ltd 31.08.2020; BioMed Central; BMC
• Subjects: ABC transporter; Adaptation, Physiological; Antioxidants; Apoptosis; Arginine; Biosynthesis; Cadmium; Cadmium - metabolism; Cadmium - toxicity; Cd stress; Chelation; Detoxification; Detoxification mechanism; Environmental aspects; Fescues (Festuca); Festuca - genetics; Festuca - metabolism; Flavonols; Gene expression; Genetic aspects; Genomics; Glutathione; Grasses; Kinases; Lolium arundinaceum; Metabolism; Metabolite profiling; Metabolites; Metabolome; Metabolomics; Molecular modelling; NG-Nitroarginine methyl ester; Nitric oxide; Nitric Oxide - metabolism; Nitrogen metabolism; Physiological adaptation; Physiological aspects; Plant hardiness; Principal components analysis; Proline; Ribonucleic acid; RNA; RNA-Seq; Secondary metabolites; Single-nucleotide polymorphism; Sodium nitroprusside; Stress, Physiological; Tall fescue; Toxicity; Transcriptome; Transcriptomics; China; Cd stress; Detoxification mechanism; RNA-Seq; Tall fescue; Metabolite profiling; Nitric oxide
• ISSN: 1471-2164; 1471-2164
• DOI: 10.1186/s12864-020-07017-8

It has been reported that nitric oxide (NO) could ameliorate cadmium (Cd) toxicity in tall fescue; however, the underlying mechanisms of NO mediated Cd detoxification are largely unknown. In this study, we investigated the possible molecular mechanisms of Cd detoxification process by comparative transcriptomic and metabolomic approaches. The application of Sodium nitroprusside (SNP) as NO donor decreased the Cd content of tall fescue by 11% under Cd stress (T1 treatment), but the Cd content was increased by 24% when treated with Carboxy-PTIO (c-PTIO) together with Nitro-L-arginine methyl ester (L-NAME) (T2 treatment). RNA-seq analysis revealed that 904 (414 up- and 490 down-regulated) and 118 (74 up- and 44 down-regulated) DEGs were identified in the T1 vs Cd (only Cd treatment) and T2 vs Cd comparisons, respectively. Moreover, metabolite profile analysis showed that 99 (65 up- and 34-down- regulated) and 131 (45 up- and 86 down-regulated) metabolites were altered in the T1 vs Cd and T2 vs Cd comparisons, respectively. The integrated analyses of transcriptomic and metabolic data showed that 81 DEGs and 15 differentially expressed metabolites were involved in 20 NO-induced pathways. The dominant pathways were antioxidant activities such as glutathione metabolism, arginine and proline metabolism, secondary metabolites such as flavone and flavonol biosynthesis and phenylpropanoid biosynthesis, ABC transporters, and nitrogen metabolism. In general, the results revealed that there are three major mechanisms involved in NO-mediated Cd detoxification in tall fescue, including (a) antioxidant capacity enhancement; (b) accumulation of secondary metabolites related to cadmium chelation and sequestration; and (c) regulation of cadmium ion transportation, such as ABC transporter activation. In conclusion, this study provides new insights into the NO-mediated cadmium stress response.