RARGE: a large-scale database of RIKEN Arabidopsis resources ranging from transcriptome to phenome
The RIKEN Arabidopsis Genome Encyclopedia (RARGE) database houses information on biological resources ranging from transcriptome to phenome, including RIKEN Arabidopsis full-length (RAFL) complementary DNAs (cDNAs), their promoter regions, Dissociation (Ds) transposon-tagged lines and expression dat...
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| Published in | Nucleic acids research Vol. 33; no. 1; pp. D647 - D650 |
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| Main Authors | , , , , , , , , , |
| Format | Journal Article |
| Language | English |
| Published |
England
Oxford University Press
01.01.2005
Oxford Publishing Limited (England) |
| Subjects | |
| Online Access | Get full text |
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| Abstract | The RIKEN Arabidopsis Genome Encyclopedia (RARGE) database houses information on biological resources ranging from transcriptome to phenome, including RIKEN Arabidopsis full-length (RAFL) complementary DNAs (cDNAs), their promoter regions, Dissociation (Ds) transposon-tagged lines and expression data from microarray experiments. RARGE provides tools for searching by resource code, sequence homology or keyword, and rapid access to detailed information on the resources. We have isolated 245 946 RAFL cDNA clones and collected 11 933 transposon-tagged lines, which are available from the RIKEN Bioresource Center and are stored in RARGE. The RARGE web interface can be accessed at http://rarge.gsc.riken.jp/. Additionally, we report 90 000 new RAFL cDNA clones here. |
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| AbstractList | The RIKEN Arabidopsis Genome Encyclopedia (RARGE) database houses information on biological resources ranging from transcriptome to phenome, including RIKEN Arabidopsis full-length (RAFL) complementary DNAs (cDNAs), their promoter regions, Dissociation (Ds) transposon-tagged lines and expression data from microarray experiments. RARGE provides tools for searching by resource code, sequence homology or keyword, and rapid access to detailed information on the resources. We have isolated 245 946 RAFL cDNA clones and collected 11 933 transposon-tagged lines, which are available from the RIKEN Bioresource Center and are stored in RARGE. The RARGE web interface can be accessed at http://rarge.gsc.riken.jp/. Additionally, we report 90 000 new RAFL cDNA clones here. The RIKEN Arabidopsis Genome Encyclopedia (RARGE) database houses information on biological resources ranging from transcriptome to phenome, including RIKEN Arabidopsis full-length (RAFL) complementary DNAs (cDNAs), their promoter regions, Dissociation ( Ds ) transposon-tagged lines and expression data from microarray experiments. RARGE provides tools for searching by resource code, sequence homology or keyword, and rapid access to detailed information on the resources. We have isolated 245 946 RAFL cDNA clones and collected 11 933 transposon-tagged lines, which are available from the RIKEN Bioresource Center and are stored in RARGE. The RARGE web interface can be accessed at http://rarge.gsc.riken.jp/ . Additionally, we report 90 000 new RAFL cDNA clones here. |
| Author | Shinozaki, K Toyoda, T Kuromori, T Sakurai, T Iida, K Seki, M Ito, T Konagaya, A Akiyama, K Satou, M |
| AuthorAffiliation | 1 Bioinformatics Group and 2 Plant Functional Genomics Group, RIKEN Genomic Sciences Center, RIKEN Yokohama Institute, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan and 3 Laboratory of Plant Molecular Biology, RIKEN Tsukuba Institute, 3-1-1 Koyadai, Tsukuba 305-0074, Japan |
| AuthorAffiliation_xml | – name: 1 Bioinformatics Group and 2 Plant Functional Genomics Group, RIKEN Genomic Sciences Center, RIKEN Yokohama Institute, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan and 3 Laboratory of Plant Molecular Biology, RIKEN Tsukuba Institute, 3-1-1 Koyadai, Tsukuba 305-0074, Japan |
| Author_xml | – sequence: 1 fullname: Sakurai, T – sequence: 2 fullname: Satou, M – sequence: 3 fullname: Akiyama, K – sequence: 4 fullname: Iida, K – sequence: 5 fullname: Seki, M – sequence: 6 fullname: Kuromori, T – sequence: 7 fullname: Ito, T – sequence: 8 fullname: Konagaya, A – sequence: 9 fullname: Toyoda, T – sequence: 10 fullname: Shinozaki, K |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/15608280$$D View this record in MEDLINE/PubMed |
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| Notes | http://www.nar.oupjournals.org/ istex:50B5190B12100400AC97AE50752CDF2C228AD0DB local:gki014 To whom correspondence should be addressed. Tel: +81-29-836-4359; Fax: +81-29-836-9060; Email: sinozaki@rtc.riken.jp ark:/67375/HXZ-3JV6LWKS-V Received June 24, 2004; Revised and Accepted September 16, 2004 ObjectType-Article-2 SourceType-Scholarly Journals-1 ObjectType-Feature-1 content type line 23 ObjectType-Article-1 ObjectType-Feature-2 2005, the authors The online version of this article has been published under an open access model. Users are entitled to use, reproduce, disseminate, or display the open access version of this article for non-commercial purposes provided that: the original authorship is properly and fully attributed; the Journal and Oxford University Press are attributed as the original place of publication with the correct citation details given; if an article is subsequently reproduced or disseminated not in its entirety but only in part or as a derivative work this must be clearly indicated. For commercial re-use permissions, please contact journals.permissions@oupjournals.org. |
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| Snippet | The RIKEN Arabidopsis Genome Encyclopedia (RARGE) database houses information on biological resources ranging from transcriptome to phenome, including RIKEN... The RIKEN Arabidopsis Genome Encyclopedia (RARGE) database houses information on biological resources ranging from transcriptome to phenome, including RIKEN... |
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| SubjectTerms | Arabidopsis Arabidopsis - genetics Arabidopsis - metabolism Arabidopsis thaliana bioinformatics complementary DNA Databases, Genetic DNA Transposable Elements DNA, Complementary - chemistry gene banks gene expression Gene Expression Profiling Genome, Plant Genomics microarray technology mutants Mutation Oligonucleotide Array Sequence Analysis Phenotype promoter regions Promoter Regions, Genetic Software transcription (genetics) Transcription, Genetic transposons |
| Title | RARGE: a large-scale database of RIKEN Arabidopsis resources ranging from transcriptome to phenome |
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