RARGE: a large-scale database of RIKEN Arabidopsis resources ranging from transcriptome to phenome

The RIKEN Arabidopsis Genome Encyclopedia (RARGE) database houses information on biological resources ranging from transcriptome to phenome, including RIKEN Arabidopsis full-length (RAFL) complementary DNAs (cDNAs), their promoter regions, Dissociation (Ds) transposon-tagged lines and expression dat...

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Published inNucleic acids research Vol. 33; no. 1; pp. D647 - D650
Main Authors Sakurai, T, Satou, M, Akiyama, K, Iida, K, Seki, M, Kuromori, T, Ito, T, Konagaya, A, Toyoda, T, Shinozaki, K
Format Journal Article
LanguageEnglish
Published England Oxford University Press 01.01.2005
Oxford Publishing Limited (England)
Subjects
Arabidopsis
Arabidopsis - genetics
Arabidopsis - metabolism
Arabidopsis thaliana
bioinformatics
complementary DNA
Databases, Genetic
DNA Transposable Elements
DNA, Complementary - chemistry
gene banks
gene expression
Gene Expression Profiling
Genome, Plant
Genomics
microarray technology
mutants
Mutation
Oligonucleotide Array Sequence Analysis
Phenotype
promoter regions
Promoter Regions, Genetic
Software
transcription (genetics)
Transcription, Genetic
transposons
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Summary:The RIKEN Arabidopsis Genome Encyclopedia (RARGE) database houses information on biological resources ranging from transcriptome to phenome, including RIKEN Arabidopsis full-length (RAFL) complementary DNAs (cDNAs), their promoter regions, Dissociation (Ds) transposon-tagged lines and expression data from microarray experiments. RARGE provides tools for searching by resource code, sequence homology or keyword, and rapid access to detailed information on the resources. We have isolated 245 946 RAFL cDNA clones and collected 11 933 transposon-tagged lines, which are available from the RIKEN Bioresource Center and are stored in RARGE. The RARGE web interface can be accessed at http://rarge.gsc.riken.jp/. Additionally, we report 90 000 new RAFL cDNA clones here.
Bibliography:http://www.nar.oupjournals.org/
istex:50B5190B12100400AC97AE50752CDF2C228AD0DB
local:gki014
To whom correspondence should be addressed. Tel: +81-29-836-4359; Fax: +81-29-836-9060; Email: sinozaki@rtc.riken.jp
ark:/67375/HXZ-3JV6LWKS-V
Received June 24, 2004; Revised and Accepted September 16, 2004
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ISSN:0305-1048
1362-4962
1362-4962
DOI:10.1093/nar/gki014