PROPHECY—a database for high-resolution phenomics

The rapid recent evolution of the field phenomics—the genome-wide study of gene dispensability by quantitative analysis of phenotypes—has resulted in an increasing demand for new data analysis and visualization tools. Following the introduction of a novel approach for precise, genome-wide quantifica...

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Published inNucleic acids research Vol. 33; no. suppl-1; pp. D369 - D373
Main Authors Fernandez-Ricaud, Luciano, Warringer, Jonas, Ericson, Elke, Pylvänäinen, Ilona, Kemp, Graham J. L., Nerman, Olle, Blomberg, Anders
Format Journal Article
LanguageEnglish
Published England Oxford University Press 01.01.2005
Oxford Publishing Limited (England)
Subjects
Biological Sciences
Biologiska vetenskaper
Computer Graphics
Databases, Genetic - standards
Gene Deletion
Genome, Fungal
Genomics
Phenotype
Saccharomyces cerevisiae
Saccharomyces cerevisiae - genetics
User-Computer Interface
Yeasts - genetics
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Summary:The rapid recent evolution of the field phenomics—the genome-wide study of gene dispensability by quantitative analysis of phenotypes—has resulted in an increasing demand for new data analysis and visualization tools. Following the introduction of a novel approach for precise, genome-wide quantification of gene dispensability in Saccharomyces cerevisiae we here announce a public resource for mining, filtering and visualizing phenotypic data—the PROPHECY database. PROPHECY is designed to allow easy and flexible access to physiologically relevant quantitative data for the growth behaviour of mutant strains in the yeast deletion collection during conditions of environmental challenges. PROPHECY is publicly accessible at http://prophecy.lundberg.gu.se.
Bibliography:local:gki126
To whom correspondence should be addressed. Tel: +46 31 7732588; Fax: +46 31 7732599; Email: anders.blomberg@gmm.gu.se
Received August 13, 2004; Revised and Accepted October 22, 2004
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ISSN:0305-1048
1362-4962
1362-4962
DOI:10.1093/nar/gki126