Measuring Diffusion and Binding Kinetics by Contact Area FRAP

• Published in: Biophysical journal Vol. 95; no. 2; pp. 920 - 930
• Main Authors: Tolentino, Timothy P., Wu, Jianhua, Zarnitsyna, Veronika I., Fang, Ying, Dustin, Michael L., Zhu, Cheng
• Format: Journal Article
• Language: English
• Published: United States Elsevier Inc 01.07.2008; Biophysical Society; The Biophysical Society
• Subjects: Binding; Binding Sites; Cell adhesion & migration; Cell Biophysics; Cells; Computer Simulation; Contact; Diffusion; Diffusion coefficient; Fluorescence; Fluorescence Recovery After Photobleaching - methods; Immunology; In situ measurement; Kinetics; Ligands; Mathematical models; Models, Biological; Models, Chemical; Neurons; Photobleaching; Protein Binding; Protein Interaction Mapping - methods; Proteins - chemistry; Proteins - metabolism; Recovery; Synapses
• ISSN: 0006-3495; 1542-0086; 1542-0086
• DOI: 10.1529/biophysj.107.114447

The immunological synapse is a stable intercellular structure that specializes in substance and signal transfer from one immune cell to another. Its formation is regulated in part by the diffusion of adhesion and signaling molecules into, and their binding of countermolecules in the contact area. The stability of immunological synapses allows receptor-ligand interactions to approximate chemical equilibrium despite other dynamic aspects. We have developed a mathematical model that describes the coupled reaction-diffusion process in an established immunological synapse. In this study, we extend a previously described contact area fluorescence recovery after photobleaching (FRAP) experiment to test the validity of the model. The receptor binding activity and lateral mobility of fluorescently labeled, lipid-anchored ligands in the bilayer resulted in their accumulation, as revealed by a much higher fluorescence intensity inside the contact area than outside. After complete photobleaching of the synapse, fluorescence recovery requires ligands to dissociate and rebind, and to diffuse in and out of the contact area. Such a FRAP time course consequently provides information on reaction and diffusion, which can be extracted by fitting the model solution to the data. Surprisingly, reverse rates in the two-dimensional contact area were at least 100-fold slower than in three-dimensional solution. As previously reported in immunological synapses, a significant nonrecoverable fraction of fluorescence was observed with one of two systems studied, suggesting some ligands either dissociated or diffused much more slowly compared with other ligands in the same synapse. The combined theory and experiment thus provides a new method for in situ measurements of kinetic rates, diffusion coefficients, and nonrecoverable fractions of interacting molecules in immunological synapses and other stable cell-bilayer junctions.