functionally based model for hydrolysis of cellulose by fungal cellulase

• Published in: Biotechnology and bioengineering Vol. 94; no. 5; pp. 888 - 898
• Main Authors: Zhang, Y.H.P, Lynd, L.R
• Format: Journal Article
• Language: English
• Published: Hoboken Wiley Subscription Services, Inc., A Wiley Company 05.08.2006; Wiley; Wiley Subscription Services, Inc
• Subjects: Biological and medical sciences; Biotechnology; Cellulase - chemistry; Cellulase - metabolism; cellulase improvement; cellulases; Cellulose; Cellulose - chemistry; Cellulose - metabolism; cellulose hydrolysis; Combinatorial Chemistry Techniques; Computer Simulation; enzymatic hydrolysis; Enzymes; Fundamental and applied biological sciences. Psychology; Hydrologic analysis; Hydrolysis; mathematical model; Mathematical models; Models, Biological; Models, Chemical; Models, Molecular; pretreatment; synergy; Trichoderma; Trichoderma - enzymology; synergy; Enzyme; Cellulose; cellulose hydrolysis; Optimization; cellulase improvement; Fungi; Hydrolysis; Cellulase; Glycosidases; Hydrolases; Pretreatment; Mathematical model; O-Glycosidases; Thallophyta
• ISSN: 0006-3592; 1097-0290
• DOI: 10.1002/bit.20906

A new functionally based kinetic model for enzymatic hydrolysis of pure cellulose by the Trichoderma cellulase system is presented. The model represents the actions of cellobiohydrolases I, cellobiohydrolase II, and endoglucanase I; and incorporates two measurable and physically interpretable substrate parameters: the degree of polymerization (DP) and the fraction of beta-glucosidic bonds accessible to cellulase, F(a) (Zhang and Lynd, 2004). Initial enzyme-limited reaction rates simulated by the model are consistent with several important behaviors reported in the literature, including the effects of substrate characteristics on exoglucanase and endoglucanase activities; the degree of endo/exoglucanase synergy; the endoglucanase partition coefficient on hydrolysis rates; and enzyme loading on relative reaction rates for different substrates. This is the first cellulase kinetic model involving a single set of kinetic parameters that is successfully applied to a variety of cellulosic substrates, and the first that describes more than one behavior associated with enzymatic hydrolysis. The model has potential utility for data accommodation and design of industrial processes, structuring, testing, and extending understanding of cellulase enzyme systems when experimental date are available, and providing guidance for functional design of cellulase systems at a molecular scale. Opportunities to further refine cellulase kinetic models are discussed, including parameters that would benefit from further study.