A minimal view of single-particle imaging with X-ray lasers
The ability to serially interrogate single biomolecules with femtosecond X-ray pulses from free-electron lasers has ushered in the possibility of determining the three-dimensional structure of biomolecules without crystallization. However, the complexity of imaging a sample's structure from ver...
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Published in | Philosophical transactions of the Royal Society of London. Series B. Biological sciences Vol. 369; no. 1647; p. 20130328 |
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Main Author | |
Format | Journal Article |
Language | English |
Published |
England
The Royal Society
17.07.2014
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Subjects | |
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Abstract | The ability to serially interrogate single biomolecules with femtosecond X-ray pulses from free-electron lasers has ushered in the possibility of determining the three-dimensional structure of biomolecules without crystallization. However, the complexity of imaging a sample's structure from very many of its noisy and incomplete diffraction data can be daunting. In this review, we introduce a simple analogue of this imaging workflow, use it to describe a structure reconstruction algorithm based on the expectation maximization principle, and consider the effects of extraneous noise. Such a minimal model can aid experiment and algorithm design in future studies. |
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AbstractList | The ability to serially interrogate single biomolecules with femtosecond X-ray pulses from free-electron lasers has ushered in the possibility of determining the three-dimensional structure of biomolecules without crystallization. However, the complexity of imaging a sample's structure from very many of its noisy and incomplete diffraction data can be daunting. In this review, we introduce a simple analogue of this imaging workflow, use it to describe a structure reconstruction algorithm based on the expectation maximization principle, and consider the effects of extraneous noise. Such a minimal model can aid experiment and algorithm design in future studies. |
Author | Loh, N. Duane |
AuthorAffiliation | 2 PULSE Institute, SLAC National Accelerator Laboratory , Menlo Park, CA 94025 , USA 1 Center for Bioimaging Sciences and Department of Biological Sciences , National University of Singapore , 14 Science Drive 4, Singapore 117411 |
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BackLink | https://www.ncbi.nlm.nih.gov/pubmed/24914155$$D View this record in MEDLINE/PubMed |
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SubjectTerms | Algorithms Bioimaging Coherent Diffraction Electrons Lasers Models, Theoretical Molecular Conformation Part II: Technique development Review Single Particle Imaging Time Factors X-Ray Diffraction - methods X-Ray Free-Electron Laser |
Title | A minimal view of single-particle imaging with X-ray lasers |
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