A molecular diagnostic for tropical race 4 of the banana fusarium wilt pathogen
This study analysed genomic variation of the translation elongation factor 1α (TEF‐1α) and the intergenic spacer region (IGS) of the nuclear ribosomal operon of Fusarium oxysporum f. sp. cubense (Foc) isolates, from different banana production areas, representing strains within the known races, comp...
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| Published in | Plant pathology Vol. 59; no. 2; pp. 348 - 357 |
|---|---|
| Main Authors | , , , , |
| Format | Journal Article |
| Language | English |
| Published |
Oxford, UK
Blackwell Publishing Ltd
01.04.2010
Blackwell Wiley Subscription Services, Inc |
| Subjects | |
| Online Access | Get full text |
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| Abstract | This study analysed genomic variation of the translation elongation factor 1α (TEF‐1α) and the intergenic spacer region (IGS) of the nuclear ribosomal operon of Fusarium oxysporum f. sp. cubense (Foc) isolates, from different banana production areas, representing strains within the known races, comprising 20 vegetative compatibility groups (VCG). Based on two single nucleotide polymorphisms present in the IGS region, a PCR‐based diagnostic tool was developed to specifically detect isolates from VCG 01213, also called tropical race 4 (TR4), which is currently a major concern in global banana production. Validation involved TR4 isolates, as well as Foc isolates from 19 other VCGs, other fungal plant pathogens and DNA samples from infected tissues of the Cavendish banana cultivar Grand Naine (AAA). Subsequently, a multiplex PCR was developed for fungal or plant samples that also discriminated Musa acuminata and M. balbisiana genotypes. It was concluded that this diagnostic procedure is currently the best option for the rapid and reliable detection and monitoring of TR4 to support eradication and quarantine strategies. |
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| AbstractList | This study analysed genomic variation of the translation elongation factor 1a (TEF-1a) and the intergenic spacer region (IGS) of the nuclear ribosomal operon of Fusarium oxysporum f. sp. cubense (Foc) isolates, from different banana production areas, representing strains within the known races, comprising 20 vegetative compatibility groups (VCG). Based on two single nucleotide polymorphisms present in the IGS region, a PCR-based diagnostic tool was developed to specifically detect isolates from VCG 01213, also called tropical race 4 (TR4), which is currently a major concern in global banana production. Validation involved TR4 isolates, as well as Foc isolates from 19 other VCGs, other fungal plant pathogens and DNA samples from infected tissues of the Cavendish banana cultivar Grand Naine (AAA). Subsequently, a multiplex PCR was developed for fungal or plant samples that also discriminated Musa acuminata and M. balbisiana genotypes. It was concluded that this diagnostic procedure is currently the best option for the rapid and reliable detection and monitoring of TR4 to support eradication and quarantine strategies. This study analysed genomic variation of the translation elongation factor 1[alpha] (TEF-1[alpha]) and the intergenic spacer region (IGS) of the nuclear ribosomal operon of Fusarium oxysporum f. sp. cubense (Foc) isolates, from different banana production areas, representing strains within the known races, comprising 20 vegetative compatibility groups (VCG). Based on two single nucleotide polymorphisms present in the IGS region, a PCR-based diagnostic tool was developed to specifically detect isolates from VCG 01213, also called tropical race 4 (TR4), which is currently a major concern in global banana production. Validation involved TR4 isolates, as well as Foc isolates from 19 other VCGs, other fungal plant pathogens and DNA samples from infected tissues of the Cavendish banana cultivar Grand Naine (AAA). Subsequently, a multiplex PCR was developed for fungal or plant samples that also discriminated Musa acuminata and M. balbisiana genotypes. It was concluded that this diagnostic procedure is currently the best option for the rapid and reliable detection and monitoring of TR4 to support eradication and quarantine strategies. This study analysed genomic variation of the translation elongation factor 1α ( TEF‐1 α) and the intergenic spacer region (IGS) of the nuclear ribosomal operon of Fusarium oxysporum f. sp. cubense (Foc) isolates, from different banana production areas, representing strains within the known races, comprising 20 vegetative compatibility groups (VCG). Based on two single nucleotide polymorphisms present in the IGS region, a PCR‐based diagnostic tool was developed to specifically detect isolates from VCG 01213, also called tropical race 4 (TR4), which is currently a major concern in global banana production. Validation involved TR4 isolates, as well as Foc isolates from 19 other VCGs, other fungal plant pathogens and DNA samples from infected tissues of the Cavendish banana cultivar Grand Naine (AAA). Subsequently, a multiplex PCR was developed for fungal or plant samples that also discriminated Musa acuminata and M . balbisiana genotypes. It was concluded that this diagnostic procedure is currently the best option for the rapid and reliable detection and monitoring of TR4 to support eradication and quarantine strategies. This study analysed genomic variation of the translation elongation factor 1a (TEF-1a) and the intergenic spacer region (IGS) of the nuclear ribosomal operon of Fusarium oxysporum f. sp. cubense (Foc) isolates, from different banana production areas, representing strains within the known races, comprising 20 vegetative compatibility groups (VCG). Based on two single nucleotide polymorphisms present in the IGS region, a PCR-based diagnostic tool was developed to specifically detect isolates from VCG 01213, also called tropical race 4 (TR4), which is currently a major concern in global banana production. Validation involved TR4 isolates, as well as Foc isolates from 19 other VCGs, other fungal plant pathogens and DNA samples from infected tissues of the Cavendish banana cultivar Grand Naine (AAA). Subsequently, a multiplex PCR was developed for fungal or plant samples that also discriminated Musa acuminata and M. balbisiana genotypes. It was concluded that this diagnostic procedure is currently the best option for the rapid and reliable detection and monitoring of TR4 to support eradication and quarantine strategies This study analysed genomic variation of the translation elongation factor 1α (TEF‐1α) and the intergenic spacer region (IGS) of the nuclear ribosomal operon of Fusarium oxysporum f. sp. cubense (Foc) isolates, from different banana production areas, representing strains within the known races, comprising 20 vegetative compatibility groups (VCG). Based on two single nucleotide polymorphisms present in the IGS region, a PCR‐based diagnostic tool was developed to specifically detect isolates from VCG 01213, also called tropical race 4 (TR4), which is currently a major concern in global banana production. Validation involved TR4 isolates, as well as Foc isolates from 19 other VCGs, other fungal plant pathogens and DNA samples from infected tissues of the Cavendish banana cultivar Grand Naine (AAA). Subsequently, a multiplex PCR was developed for fungal or plant samples that also discriminated Musa acuminata and M. balbisiana genotypes. It was concluded that this diagnostic procedure is currently the best option for the rapid and reliable detection and monitoring of TR4 to support eradication and quarantine strategies. |
| Author | Souza Jr, M. T. Waalwijk, C. Kema, G. H. J. Dita, M. A. Buddenhagen, I. W. |
| Author_xml | – sequence: 1 givenname: M. A. surname: Dita fullname: Dita, M. A. – sequence: 2 givenname: C. surname: Waalwijk fullname: Waalwijk, C. – sequence: 3 givenname: I. W. surname: Buddenhagen fullname: Buddenhagen, I. W. – sequence: 4 givenname: M. T. surname: Souza Jr fullname: Souza Jr, M. T. – sequence: 5 givenname: G. H. J. surname: Kema fullname: Kema, G. H. J. |
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| Keywords | Monocotyledones Plant pathology vegetative compatibility groups Plant pathogen Mycosis PCR-based diagnostic Molecular methods Tropical zone Fusarium oxysporum f. sp. cubense in planta detection Climacteric Fungi Tropical fruit Pathogenic Angiospermae Race Fungi Imperfecti Diagnosis In planta Panama disease Fusarium oxysporum Tropical crop Musaceae Experimental study Vegetative compatibility group Banana Infection Polymerase chain reaction In vivo Musa spp Musa Fruit crop Isolate Spermatophyta Molecular biology Detection |
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| Snippet | This study analysed genomic variation of the translation elongation factor 1α (TEF‐1α) and the intergenic spacer region (IGS) of the nuclear ribosomal operon... This study analysed genomic variation of the translation elongation factor 1α ( TEF‐1 α) and the intergenic spacer region (IGS) of the nuclear ribosomal operon... This study analysed genomic variation of the translation elongation factor 1[alpha] (TEF-1[alpha]) and the intergenic spacer region (IGS) of the nuclear... This study analysed genomic variation of the translation elongation factor 1a (TEF-1a) and the intergenic spacer region (IGS) of the nuclear ribosomal operon... |
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| SubjectTerms | australia Biological and medical sciences f-sp cubense Fundamental and applied biological sciences. Psychology Fungal plant pathogens Fusarium oxysporum Fusarium oxysporum f. sp. cubense in planta detection genetic-variation genomics identification Musa Musa acuminata Musa spp Operons oxysporum Panama disease Pathogens pcr PCR‐based diagnostic Phytopathology. Animal pests. Plant and forest protection Polymerase chain reaction quantification Quarantine Single-nucleotide polymorphism Spacer region tissue Translation elongation vegetative compatibility groups Wilt |
| Title | A molecular diagnostic for tropical race 4 of the banana fusarium wilt pathogen |
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