Development of an RT-LAMP Assay for the Rapid Detection of SFTS Virus

• Published in: Viruses Vol. 13; no. 4; p. 693
• Main Authors: Sano, Shiori, Fukushi, Shuetsu, Yamada, Souichi, Harada, Shizuko, Kinoshita, Hitomi, Sugimoto, Satoko, Yoshikawa, Tomoki, Kurosu, Takeshi, Takamatsu, Yuki, Shimojima, Masayuki, Toda, Shoichi, Hamada, Yuka, Fujisawa, Naoki, Sugimoto, Takayuki, Saijo, Masayuki
• Format: Journal Article
• Language: English
• Published: Switzerland MDPI AG 16.04.2021; MDPI
• Subjects: Binding sites; Blood; Coronaviruses; disease control; Fever; Gene amplification; genome; Genomes; Genotypes; Huaiyangshan banyangvirus; humans; Patients; Polymerase chain reaction; rapid methods; Respiratory diseases; reverse transcriptase polymerase chain reaction; Reverse transcription; reverse transcription loop-mediated isothermal amplification; Ribonucleic acid; RNA; RNA polymerase; RT-LAMP; severe fever with thrombocytopenia syndrome; SFTS virus; simplified method; Thrombocytopenia; Viral infections; Viruses; United States > US; Japan; Germany; RT-LAMP; simplified method; SFTS virus
• ISSN: 1999-4915; 1999-4915
• DOI: 10.3390/v13040693

Detection of severe fever with thrombocytopenia syndrome (SFTS) virus (SFTSV) during the early phase of the disease is important for appropriate treatment, infection control, and prevention of further transmission. The reverse transcription loop-mediated isothermal amplification (RT-LAMP) is a nucleic acid amplification method that amplifies the target sequence under isothermal conditions. Here, we developed an RT-LAMP with a novel primer/probe set targeting a conserved region of the SFTSV L segment after extraction of viral RNA (standard RT-LAMP). Both the Chinese and Japanese SFTSV strains, including various genotypes, were detected by the standard RT-LAMP. We also performed RT-LAMP using the same primer/probe set but without the viral RNA extraction step (called simplified RT-LAMP) and evaluated the diagnostic efficacy. The sensitivity and specificity of the simplified RT-LAMP were 84.9% (45/53) and 89.5% (2/19), respectively. The simplified RT-LAMP can detect SFTSV in human sera containing >103.5 copies/mL viral RNA. The two RT-LAMP positive but quantitative real-time reverse transcription-polymerase chain reaction (RT-PCR) negative samples were positive in the conventional RT-PCR, suggesting that there was no false positive reaction in the RT-LAMP. Both the standard and simplified RT-LAMP are useful for detecting the SFTSV genome in patients during the early phase of the disease.