Genome-wide association identifies a susceptibility locus for coronary artery disease in the Chinese Han population
Qing Wang and colleagues report a genome-wide association study for coronary artery disease (CAD) in a Chinese Han population. They identify a locus on chromosome 6p24.1 newly associated with CAD. Coronary artery disease (CAD) causes more than 700,000 deaths each year in China. Previous genome-wide...
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Published in | Nature genetics Vol. 43; no. 4; pp. 345 - 349 |
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Main Authors | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
Format | Journal Article |
Language | English |
Published |
New York
Nature Publishing Group US
01.04.2011
Nature Publishing Group |
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Abstract | Qing Wang and colleagues report a genome-wide association study for coronary artery disease (CAD) in a Chinese Han population. They identify a locus on chromosome 6p24.1 newly associated with CAD.
Coronary artery disease (CAD) causes more than 700,000 deaths each year in China. Previous genome-wide association studies (GWAS) in populations of European ancestry identified several genetic loci for CAD, but no such study has yet been reported in the Chinese population. Here we report a three-stage GWAS in the Chinese Han population. We identified a new association between rs6903956 in a putative gene denoted as
C6orf105
on chromosome 6p24.1 and CAD (
P
= 5.00 × 10
−3
, stage 2 validation;
P
= 3.00 × 10
−3
,
P
= 1.19 × 10
−8
and
P
= 4.00 × 10
−3
in three independent stage 3 replication populations;
P
= 4.87 × 10
−12
, odds ratio = 1.51 in the combined population). The minor risk allele A of rs6903956 is associated with decreased
C6orf105
mRNA expression. We report the first GWAS for CAD in the Chinese Han population and identify a SNP, rs6903956, in
C6orf105
associated with susceptibility to CAD in this population. |
---|---|
AbstractList | Coronary artery disease (CAD) causes more than 700,000 deaths each year in China. Previous genome-wide association studies (GWAS) in populations of European ancestry identified several genetic loci for CAD, but no such study has yet been reported in the Chinese population. Here we report a three-stage GWAS in the Chinese Han population. We identified a new association between rs6903956 in a putative gene denoted as C6orf105 on chromosome 6p24.1 and CAD (P = 5.00 x [10.sup.-3], stage 2 validation; P = 3.00 x [10.sup.-3], P = 1.19 x [10.sup.-8] and P = 4.00 x [10.sup.-3] in three independent stage 3 replication populations; P = 4.87 x [10.sup.-12], odds ratio = 1.51 in the combined population). The minor risk allele A of rs6903956 is associated with decreased C6orf105 mRNA expression. We report the first GWAS for CAD in the Chinese Han population and identify a SNP, rs6903956, in C6orf105 associated with susceptibility to CAD in this population. Qing Wang and colleagues report a genome-wide association study for coronary artery disease (CAD) in a Chinese Han population. They identify a locus on chromosome 6p24.1 newly associated with CAD. Coronary artery disease (CAD) causes more than 700,000 deaths each year in China. Previous genome-wide association studies (GWAS) in populations of European ancestry identified several genetic loci for CAD, but no such study has yet been reported in the Chinese population. Here we report a three-stage GWAS in the Chinese Han population. We identified a new association between rs6903956 in a putative gene denoted as C6orf105 on chromosome 6p24.1 and CAD ( P = 5.00 × 10 −3 , stage 2 validation; P = 3.00 × 10 −3 , P = 1.19 × 10 −8 and P = 4.00 × 10 −3 in three independent stage 3 replication populations; P = 4.87 × 10 −12 , odds ratio = 1.51 in the combined population). The minor risk allele A of rs6903956 is associated with decreased C6orf105 mRNA expression. We report the first GWAS for CAD in the Chinese Han population and identify a SNP, rs6903956, in C6orf105 associated with susceptibility to CAD in this population. Coronary artery disease (CAD) causes more than 700,000 deaths each year in China. Previous genome-wide association studies (GWAS) in populations of European ancestry identified several genetic loci for CAD, but no such study has yet been reported in the Chinese population. Here we report a three-stage GWAS in the Chinese Han population. We identified a new association between rs6903956 in a putative gene denoted as C6orf105 on chromosome 6p24.1 and CAD (P = 5.00 × 10^sup -3^, stage 2 validation; P = 3.00 × 10^sup -3^, P = 1.19 × 10^sup -8^ and P = 4.00 × 10^sup -3^ in three independent stage 3 replication populations; P = 4.87 × 10^sup -12^, odds ratio = 1.51 in the combined population). The minor risk allele A of rs6903956 is associated with decreased C6orf105 mRNA expression. We report the first GWAS for CAD in the Chinese Han population and identify a SNP, rs6903956, in C6orf105 associated with susceptibility to CAD in this population. [PUBLICATION ABSTRACT] Coronary artery disease (CAD) causes more than 700,000 deaths each year in China. Previous genome-wide association studies (GWAS) in populations of European ancestry identified several genetic loci for CAD, but no such study has yet been reported in the Chinese population. Here we report a three-stage GWAS in the Chinese Han population. We identified a new association between rs6903956 in a putative gene denoted as C6orf105 on chromosome 6p24.1 and CAD (P = 5.00 × 10⁻³, stage 2 validation; P = 3.00 × 10⁻³, P = 1.19 × 10⁻⁸ and P = 4.00 × 10⁻³ in three independent stage 3 replication populations; P = 4.87 × 10⁻¹², odds ratio = 1.51 in the combined population). The minor risk allele A of rs6903956 is associated with decreased C6orf105 mRNA expression. We report the first GWAS for CAD in the Chinese Han population and identify a SNP, rs6903956, in C6orf105 associated with susceptibility to CAD in this population. |
Audience | Academic |
Author | Wang, Nan Wang, Dan Ke, Tie Ke, Yu-He Jia, Na Cui, Jin Li, Xiu-Chun Yin, Dan Liu, Hui Wu, Gang Huang, Yuan Luo, Chun-Yan Huang, Er-Wen Liu, Jing-Yu Bai, Ying Lei, Jian Liu, Mu-Gen Tu, Xin Ren, Xiang Liao, Yu-Hua Li, Cong Xia, Yun-Long Xiong, Xin Yang, Yan-Zong Lu, Qiu-Lun Yang, Rong Cai, Jian-Ping Ren, Jiang-Hua Yang, Bo Li, Yue Zhang, Rong-Feng Wang, Qing K Li, Qing-Xian Xia, Hao Cheng, Xiang Xu, Cheng-Qi Wang, Chu-Chu Lin, Nan Zhang, Xian-Qin Wu, Yan-Xia Shi, Sheng-Wei Yang, Qing Li, Si-Si Gao, Lian-Jun Ji, Li-Ying Zeng, Qiu-Tang Li, Hui He, Qing Wang, Xiao-Jing Wan, Jing Shi, Li-Song Zhao, Yuan-Yuan Huang, Yu-Feng Dai, Da-Peng Pan, Zhen-Wei Yu, Bo Wang, Fan Fu, Fen-Fen Li, Lei |
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organization: Affiliated Hospital of Jining Medical Collage – sequence: 31 givenname: Sheng-Wei surname: Shi fullname: Shi, Sheng-Wei organization: Affiliated Hospital of Jining Medical Collage – sequence: 32 givenname: Nan surname: Lin fullname: Lin, Nan organization: Affiliated Hospital of Jining Medical Collage – sequence: 33 givenname: Zhen-Wei surname: Pan fullname: Pan, Zhen-Wei organization: Department of Pharmacology, Harbin Medical University – sequence: 34 givenname: Yue surname: Li fullname: Li, Yue organization: The First Affiliated Hospital, Harbin Medical University – sequence: 35 givenname: Bo surname: Yu fullname: Yu, Bo organization: The Second Affiliated Hospital, Harbin Medical University – sequence: 36 givenname: Yan-Xia surname: Wu fullname: Wu, Yan-Xia organization: The First Hospital of Wuhan City – sequence: 37 givenname: Yu-He surname: Ke fullname: Ke, Yu-He organization: The First Hospital of Wuhan City – sequence: 38 givenname: Jian surname: Lei fullname: 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Snippet | Qing Wang and colleagues report a genome-wide association study for coronary artery disease (CAD) in a Chinese Han population. They identify a locus on... Coronary artery disease (CAD) causes more than 700,000 deaths each year in China. Previous genome-wide association studies (GWAS) in populations of European... |
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SubjectTerms | 631/208/205/2138 631/208/727/2000 692/699/75/593/15 692/700/478/174 Agriculture Alleles Animal Genetics and Genomics Asian Continental Ancestry Group - genetics Biological and medical sciences Biomedical and Life Sciences Biomedicine Cancer Research Case-Control Studies China Chromosomes, Human, Pair 6 - genetics Coronary Artery Disease - genetics Coronary heart disease Disease susceptibility Female Fundamental and applied biological sciences. Psychology Gene Function Genetic aspects Genetic Predisposition to Disease Genetics of eukaryotes. Biological and molecular evolution Genome-Wide Association Study Genomes Heart attacks Human Human Genetics Humans Hypertension letter Linkage Disequilibrium Male Polymorphism, Single Nucleotide Population genetics, reproduction patterns Regression analysis Risk Factors RNA, Messenger - genetics Single nucleotide polymorphisms |
Title | Genome-wide association identifies a susceptibility locus for coronary artery disease in the Chinese Han population |
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